9AME Antifreeze Protein date Jan 24, 1999
title Type III Antifreeze Protein Isoform Hplc 12 S42g
authors S.P.Graether, C.I.Deluca, J.Baardsnes, G.A.Hill, P.L.Davies, Z.Ji
compound source
Molecule: Protein (Antifreeze Protein Type III)
Chain: A
Synonym: Type III Antifreeze Protein Qae Isoform
Engineered: Yes
Mutation: Yes
 Organism_scientific: Macrozoarces Americanus
Organism_common: Ocean Pout
Organism_taxid: 8199
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pt7-7f
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.710 39.365 46.511 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1GZI, 1OPS, 2MSI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceQuantitative and qualitative analysis of type III antifreeze protein structure and function., Graether SP, DeLuca CI, Baardsnes J, Hill GA, Davies PL, Jia Z, J Biol Chem 1999 Apr 23;274(17):11842-7. PMID:10207002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (9ame.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 9AME
  • Likely Quarternary Molecular Structure file(s) for 9AME
  • Retrieve 9AME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 9AME from S2C, [Save to disk]
    • View 9AME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 9AME
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 9AME, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d9amea_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [9ame_A] [9ame]
  • SWISS-PROT database: [P19614]
  • Domain organization of [ANP12_MACAM] by SWISSPFAM
    • Other resources with information on 9AME
  • Community annotation for 9AME at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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