9RSA Hydrolase (Phosphoric Diester) date Aug 28, 1989
title Crystal Structure Of Two Covalent Nucleoside Derivatives Of Ribonuclease A
authors J.Nachman, A.Wlodawer
compound source
Molecule: Ribonuclease A
Chain: A, B
Ec: 3.1.27.5
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell_line: S2
Organ: Pancreas
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.750 64.100 73.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ADU enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1RBF, 1Z3L
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referenceCrystal structure of two covalent nucleoside derivatives of ribonuclease A., Nachman J, Miller M, Gilliland GL, Carty R, Pincus M, Wlodawer A, Biochemistry 1990 Jan 30;29(4):928-37. PMID:2340284
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (9rsa.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 9RSA
  • CSU: Contacts of Structural Units for 9RSA
  • Likely Quarternary Molecular Structure file(s) for 9RSA
  • Retrieve 9RSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 9RSA from S2C, [Save to disk]
    • View 9RSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 9RSA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 9RSA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d9rsaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d9rsab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [9rsa] [9rsa_B] [9rsa_A]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 9RSA: [RNAse_Pc ] by SMART
    • Other resources with information on 9RSA
  • Community annotation for 9RSA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 9RSA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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