Structure based on 4eg6

Ideal structure
Name: 4-{4-[(1h-benzimidazol-2-ylmethyl)amino]-6-(2-chloro-4-methoxyphenoxy)pyrimidin-2-yl}piperazin-2-one
Formula: C23 H22 Cl N7 O3
Weight: 479.919
SMILES: "COc1ccc(Oc2cc(NCc3[nH]c4ccccc4n3)nc(n2)N5CCNC(=O)C5)c(Cl)c1"
Spacial conformation based on PDB 4eg6
RESIDUE   0P5     56
CONECT      CL1    1 CAY 
CONECT      CAY    3 CL1  CAJ  CBD 
CONECT      CAJ    3 CAY  CAZ  H1  
CONECT      CAZ    3 CAJ  OAV  CAF 
CONECT      OAV    2 CAZ  CAA 
CONECT      CAA    4 OAV  H2   H3   H4  
CONECT      CAF    3 CAZ  CAG  H5  
CONECT      CAG    3 CAF  CBD  H6  
CONECT      CBD    3 CAY  CAG  OAW 
CONECT      OAW    2 CBD  C4  
CONECT      C4     3 OAW  C5   N3  
CONECT      C5     3 C4   C6   H7  
CONECT      N3     2 C4   C2  
CONECT      C2     3 N3   N    N1  
CONECT      N      3 C2   CA   CAM 
CONECT      CA     4 N    C    H8   H9  
CONECT      CAM    4 N    CAL  H10  H11 
CONECT      CAL    4 CAM  NAS  H12  H13 
CONECT      NAS    3 CAL  C    H14 
CONECT      C      3 CA   NAS  O   
CONECT      O      1 C   
CONECT      N1     2 C2   C6  
CONECT      C6     3 C5   N1   NAT 
CONECT      NAT    3 C6   CAN  H15 
CONECT      CAN    4 NAT  CBC  H16  H17 
CONECT      CBC    3 CAN  NAU  NAR 
CONECT      NAU    3 CBC  CBG  H18 
CONECT      CBG    3 NAU  CAI  CBF 
CONECT      CAI    3 CBG  CAE  H19 
CONECT      CAE    3 CAI  CAD  H20 
CONECT      CAD    3 CAE  CAH  H21 
CONECT      CAH    3 CAD  CBF  H22 
CONECT      CBF    3 CBG  CAH  NAR 
CONECT      NAR    2 CBC  CBF 
CONECT      H1     1 CAJ 
CONECT      H2     1 CAA 
CONECT      H3     1 CAA 
CONECT      H4     1 CAA 
CONECT      H5     1 CAF 
CONECT      H6     1 CAG 
CONECT      H7     1 C5  
CONECT      H8     1 CA  
CONECT      H9     1 CA  
CONECT      H10    1 CAM 
CONECT      H11    1 CAM 
CONECT      H12    1 CAL 
CONECT      H13    1 CAL 
CONECT      H14    1 NAS 
CONECT      H15    1 NAT 
CONECT      H16    1 CAN 
CONECT      H17    1 CAN 
CONECT      H18    1 NAU 
CONECT      H19    1 CAI 
CONECT      H20    1 CAE 
CONECT      H21    1 CAD 
CONECT      H22    1 CAH 
END   
HET    0P5             56
HETNAM     0P5 4-{4-[(1H-benzimidazol-2-ylmethyl)amino]-6-(2-chloro-4-
HETNAM   2 0P5 methoxyphenoxy)pyrimidin-2-yl}piperazin-2-one
FORMUL      0P5    C23 H22 Cl1 N7 O3

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science