Structure based on 4jvf

Ideal structure
Name: (2s)-2-(2-phenyl-1h-benzimidazol-1-yl)-2-(piperidin-4-yl)ethyl 1-(1-benzyl-1h-benzimidazol-2-yl)piperidine-4-carboxylate
Formula: C40 H42 N6 O2
Weight: 638.800
SMILES: "O=C(OC[CH](C1CCNCC1)n2c3ccccc3nc2c4ccccc4)C5CCN(CC5)c6nc7ccccc7n6Cc8ccccc8"
Spacial conformation based on PDB 4jvf
RESIDUE   17X     90
CONECT      CAI    3 CAJ  CAH  H1  
CONECT      CAJ    3 CAI  CAK  H2  
CONECT      CAK    3 CAJ  CAL  H3  
CONECT      CAL    3 CAK  CAM  H4  
CONECT      CAM    3 CAL  CAH  H5  
CONECT      CAH    3 CAI  CAM  CAG 
CONECT      CAG    4 CAH  NAD  H6   H7  
CONECT      NAD    3 CAG  CAC  CAB 
CONECT      CAC    3 NAD  CAF  CAV 
CONECT      CAF    3 CAC  CAE  H8  
CONECT      CAE    3 CAF  CAX  H9  
CONECT      CAX    3 CAE  CAW  H10 
CONECT      CAW    3 CAX  CAV  H11 
CONECT      CAV    3 CAC  CAW  NAY 
CONECT      NAY    2 CAV  CAB 
CONECT      CAB    3 NAD  NAY  NAA 
CONECT      NAA    3 CAB  CAR  CAN 
CONECT      CAR    4 NAA  CAQ  H12  H13 
CONECT      CAQ    4 CAR  CAP  H14  H15 
CONECT      CAN    4 NAA  CAO  H16  H17 
CONECT      CAO    4 CAN  CAP  H18  H19 
CONECT      CAP    4 CAQ  CAO  CAS  H20 
CONECT      CAS    3 CAP  OAT  OAU 
CONECT      OAT    1 CAS 
CONECT      OAU    2 CAS  CBP 
CONECT      CBP    4 OAU  CBO  H21  H22 
CONECT      CBO    4 CBP  CBQ  NBH  H23 
CONECT      CBQ    4 CBO  CBR  CBU  H24 
CONECT      CBR    4 CBQ  CBS  H25  H26 
CONECT      CBS    4 CBR  NBV  H27  H28 
CONECT      NBV    3 CBS  CBT  H29 
CONECT      CBT    4 NBV  CBU  H31  H32 
CONECT      CBU    4 CBQ  CBT  H33  H34 
CONECT      NBH    3 CBO  CBD  CBG 
CONECT      CBD    3 NBH  CBE  CBC 
CONECT      CBE    3 CBD  CAZ  H35 
CONECT      CAZ    3 CBE  CBA  H36 
CONECT      CBA    3 CAZ  CBB  H37 
CONECT      CBB    3 CBA  CBC  H38 
CONECT      CBC    3 CBD  CBB  NBF 
CONECT      NBF    2 CBC  CBG 
CONECT      CBG    3 NBH  NBF  CBI 
CONECT      CBI    3 CBG  CBJ  CBN 
CONECT      CBJ    3 CBI  CBK  H39 
CONECT      CBK    3 CBJ  CBL  H40 
CONECT      CBL    3 CBK  CBM  H41 
CONECT      CBM    3 CBL  CBN  H42 
CONECT      CBN    3 CBI  CBM  H43 
CONECT      H1     1 CAI 
CONECT      H2     1 CAJ 
CONECT      H3     1 CAK 
CONECT      H4     1 CAL 
CONECT      H5     1 CAM 
CONECT      H6     1 CAG 
CONECT      H7     1 CAG 
CONECT      H8     1 CAF 
CONECT      H9     1 CAE 
CONECT      H10    1 CAX 
CONECT      H11    1 CAW 
CONECT      H12    1 CAR 
CONECT      H13    1 CAR 
CONECT      H14    1 CAQ 
CONECT      H15    1 CAQ 
CONECT      H16    1 CAN 
CONECT      H17    1 CAN 
CONECT      H18    1 CAO 
CONECT      H19    1 CAO 
CONECT      H20    1 CAP 
CONECT      H21    1 CBP 
CONECT      H22    1 CBP 
CONECT      H23    1 CBO 
CONECT      H24    1 CBQ 
CONECT      H25    1 CBR 
CONECT      H26    1 CBR 
CONECT      H27    1 CBS 
CONECT      H28    1 CBS 
CONECT      H29    1 NBV 
CONECT      H31    1 CBT 
CONECT      H32    1 CBT 
CONECT      H33    1 CBU 
CONECT      H34    1 CBU 
CONECT      H35    1 CBE 
CONECT      H36    1 CAZ 
CONECT      H37    1 CBA 
CONECT      H38    1 CBB 
CONECT      H39    1 CBJ 
CONECT      H40    1 CBK 
CONECT      H41    1 CBL 
CONECT      H42    1 CBM 
CONECT      H43    1 CBN 
END   
HET    17X             90
HETNAM     17X (2S)-2-(2-phenyl-1H-benzimidazol-1-yl)-2-(piperidin-4-y
HETNAM   2 17X l)ethyl 1-(1-benzyl-1H-benzimidazol-2-yl)piperidine-4-c
HETNAM   3 17X arboxylate
FORMUL      17X    C40 H42 N6 O2

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science