Structure based on 1wv5

Ideal structure
Name: 2'-o-butyl-thymidine
Formula: C14 H23 N2 O9 P
Weight: 394.314
SMILES: "CCCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O"
Spacial conformation based on PDB 1wv5.
Also present on 1wv6
RESIDUE   2BT     49
CONECT      P      4 OP3  OP2  O5'  OP1 
CONECT      OP3    2 P    HOP3
CONECT      OP2    2 P    HOP2
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N1   C2'  H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5M  C6  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      C6     3 N1   C5   H6  
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  CA' 
CONECT      CA'    4 O2'  CB'  HA'1 HA'2
CONECT      CB'    4 CA'  CC'  HB'1 HB'2
CONECT      CC'    4 CB'  CD'  HC'1 HC'2
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      CD'    4 CC'  HD'1 HD'2 HD'3
CONECT      OP1    1 P   
CONECT      HOP3   1 OP3 
CONECT      HOP2   1 OP2 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      HN3    1 N3  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      H6     1 C6  
CONECT      H2'    1 C2' 
CONECT      HA'1   1 CA' 
CONECT      HA'2   1 CA' 
CONECT      HB'1   1 CB' 
CONECT      HB'2   1 CB' 
CONECT      HC'1   1 CC' 
CONECT      HC'2   1 CC' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      HD'1   1 CD' 
CONECT      HD'2   1 CD' 
CONECT      HD'3   1 CD' 
END   
HET    2BT             49
HETSYN     2BT 2'-O-BUTYL-5-METHYLURIDINE
HETNAM     2BT 2'-O-BUTYL-THYMIDINE
FORMUL      2BT    C14 H23 N2 O9 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science