Structure based on 1osr

Ideal structure
Name: n-(2-deoxy-beta-d-erytho-pentofuranosyl-5-phosphate) formamide
Formula: C6 H12 N O7 P
Weight: 241.136
SMILES: "O[CH]1C[CH](NC=O)O[CH]1CO[P](O)(O)=O"
Spacial conformation based on PDB 1osr
RESIDUE   2DF     27
CONECT      P      4 O1P  O2P  O3P  O5' 
CONECT      O1P    1 P   
CONECT      O2P    2 P    HOP2
CONECT      O3P    2 P    HOP3
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N1   C2'  H1' 
CONECT      N1     3 C1'  C2   H1  
CONECT      C2     3 N1   O2   H2  
CONECT      O2     1 C2  
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      O3'    2 C3'  H3T 
CONECT      HOP2   1 O2P 
CONECT      HOP3   1 O3P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H1     1 N1  
CONECT      H2     1 C2  
CONECT      H3'    1 C3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3T    1 O3' 
END   
HET    2DF             27
HETNAM     2DF N-(2-DEOXY-BETA-D-ERYTHO-PENTOFURANOSYL-5-PHOSPHATE) FO
HETNAM   2 2DF RMAMIDE
FORMUL      2DF    C6 H12 N1 O7 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science