Structure based on 5c7d

Ideal structure
Name: (2r)-4-[2-(6-chloro-2,3-dihydro-1h-pyrrolo[3,2-c]pyridin-1-yl)-2-oxoethyl]-2-methylpiperazin-1-ium
Formula: C14 H20 Cl N4 O
Weight: 295.788
SMILES: "C[CH]1CN(CC[NH2+]1)CC(=O)N2CCc3cnc(Cl)cc23"
Spacial conformation based on PDB 5c7d
RESIDUE   4YF     40
CONECT      C1     4 C2   H21  H23  H22 
CONECT      C2     4 C1   C3   N20  H24 
CONECT      C3     4 C2   N4   H25  H26 
CONECT      N4     3 C3   C5   C18 
CONECT      C5     4 N4   C6   H28  H27 
CONECT      C6     3 C5   O7   N8  
CONECT      C10    4 C11  C9   H31  H32 
CONECT      C11    3 C10  C12  C17 
CONECT      C12    3 C11  N13  H33 
CONECT      C14    3 C16  N13  CL  
CONECT      C16    3 C14  C17  H34 
CONECT      C19    4 C18  N20  H37  H38 
CONECT      O7     1 C6  
CONECT      N8     3 C6   C9   C17 
CONECT      C9     4 C10  N8   H29  H30 
CONECT      N13    2 C12  C14 
CONECT      CL     1 C14 
CONECT      C17    3 C11  C16  N8  
CONECT      C18    4 N4   C19  H36  H35 
CONECT      N20    4 C2   C19  H40  H39 
CONECT      H21    1 C1  
CONECT      H23    1 C1  
CONECT      H22    1 C1  
CONECT      H24    1 C2  
CONECT      H25    1 C3  
CONECT      H26    1 C3  
CONECT      H28    1 C5  
CONECT      H27    1 C5  
CONECT      H31    1 C10 
CONECT      H32    1 C10 
CONECT      H33    1 C12 
CONECT      H34    1 C16 
CONECT      H37    1 C19 
CONECT      H38    1 C19 
CONECT      H29    1 C9  
CONECT      H30    1 C9  
CONECT      H36    1 C18 
CONECT      H35    1 C18 
CONECT      H40    1 N20 
CONECT      H39    1 N20 
END   
HET    4YF             40
HETNAM     4YF (2R)-4-[2-(6-chloro-2,3-dihydro-1H-pyrrolo[3,2-c]pyridi
HETNAM   2 4YF n-1-yl)-2-oxoethyl]-2-methylpiperazin-1-ium
FORMUL      4YF    C14 H20 Cl1 N4 O1 1+

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science