Structure based on 3ke1

Ideal structure
Name: 5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine
Formula: C15 H17 N5 O5
Weight: 347.326
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)c3ccncc3)[CH](O)[CH]2O"
Spacial conformation based on PDB 3ke1
RESIDUE   829     42
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   HN4  HN4A
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      C07    3 C13  O15  N5' 
CONECT      C08    3 C09  C13  H08 
CONECT      C09    3 C08  N10  H09 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      N10    2 C09  C11 
CONECT      C11    3 N10  C12  H11 
CONECT      C12    3 C11  C13  H12 
CONECT      C13    3 C07  C08  C12 
CONECT      O15    1 C07 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  N5'  H5'  H5'A
CONECT      N5'    3 C07  C5'  HN5'
CONECT      HN4    1 N4  
CONECT      HN4A   1 N4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H08    1 C08 
CONECT      H09    1 C09 
CONECT      H1'    1 C1' 
CONECT      H11    1 C11 
CONECT      H12    1 C12 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      HN5'   1 N5' 
END   
HET    829             42
HETNAM     829 5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine
FORMUL      829    C15 H17 N5 O5

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science