Structure based on 5nbf

Ideal structure
Name: (3~{s},6~{s},7~{r},9~{a}~{r})-6-[[(3~{s},6~{r},8~{a}~{s})-1'-[(2~{s})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonylamino]-7-methyl-5-oxidanylidene-1,2,3,6,7,9~{a}-hexahydropyrrolo[1,2-a]azepine-3-carboxylic acid
Formula: C34 H40 Cl N5 O7
Weight: 666.164
SMILES: "C[CH]1C=C[CH]2CC[CH](N2C(=O)[CH]1NC(=O)[CH]3CC[CH]4C=C[C]5(CCCN5C(=O)[CH](Cc6ccccc6Cl)NC(C)=O)C(=O)N34)C(O)=O"
Spacial conformation based on PDB 5nbf
RESIDUE   8S8     87
CONECT      C5     4 C6   C4   N1   H5  
CONECT      C6     3 C5   C7   H6  
CONECT      C7     3 C6   C8   H7  
CONECT      O7     1 C25 
CONECT      C1     3 C2   O1   O2  
CONECT      C10    4 C20  C9   N3   H10 
CONECT      C11    3 C12  N5   O4  
CONECT      C12    4 C11  C13  N4   H12 
CONECT      C13    4 C12  C14  H13  H2A 
CONECT      C14    3 C13  C15  C16 
CONECT      C15    3 C14  C19  CL  
CONECT      C16    3 C14  C17  H16 
CONECT      C17    3 C16  C18  H17 
CONECT      C18    3 C17  C19  H18 
CONECT      C19    3 C15  C18  H19 
CONECT      C2     4 C1   C3   N1   H22 
CONECT      C20    3 C10  N2   O6  
CONECT      C21    4 C25  C8   N2   H21 
CONECT      C23    4 C8   H94  H93  H23 
CONECT      C24    4 C27  C9   H4A  H24 
CONECT      C25    3 O7   C21  N1  
CONECT      C26    3 C28  C35  H26 
CONECT      C27    4 C24  C28  N3   H27 
CONECT      C28    3 C26  C27  H28 
CONECT      C29    4 C30  C34  H29  H37 
CONECT      C3     4 C2   C4   H32  H31 
CONECT      C30    4 C29  N5   H30  H36 
CONECT      C31    3 C35  N3   O3  
CONECT      C32    3 C33  N4   O5  
CONECT      C33    4 C32  H35  H33  H34 
CONECT      C34    4 C29  C35  H39  H38 
CONECT      C35    4 C26  C31  C34  N5  
CONECT      C4     4 C5   C3   H42  H41 
CONECT      C8     4 C7   C21  C23  H8  
CONECT      C9     4 C10  C24  H91  H92 
CONECT      N1     3 C5   C2   C25 
CONECT      N2     3 C20  C21  H25 
CONECT      N3     3 C10  C27  C31 
CONECT      N4     3 C12  C32  H43 
CONECT      N5     3 C11  C30  C35 
CONECT      O1     1 C1  
CONECT      O2     2 C1   H1  
CONECT      O3     1 C31 
CONECT      O4     1 C11 
CONECT      O5     1 C32 
CONECT      O6     1 C20 
CONECT      CL     1 C15 
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      H10    1 C10 
CONECT      H12    1 C12 
CONECT      H13    1 C13 
CONECT      H2A    1 C13 
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      H18    1 C18 
CONECT      H19    1 C19 
CONECT      H22    1 C2  
CONECT      H21    1 C21 
CONECT      H94    1 C23 
CONECT      H93    1 C23 
CONECT      H23    1 C23 
CONECT      H4A    1 C24 
CONECT      H24    1 C24 
CONECT      H26    1 C26 
CONECT      H27    1 C27 
CONECT      H28    1 C28 
CONECT      H29    1 C29 
CONECT      H37    1 C29 
CONECT      H32    1 C3  
CONECT      H31    1 C3  
CONECT      H30    1 C30 
CONECT      H36    1 C30 
CONECT      H35    1 C33 
CONECT      H33    1 C33 
CONECT      H34    1 C33 
CONECT      H39    1 C34 
CONECT      H38    1 C34 
CONECT      H42    1 C4  
CONECT      H41    1 C4  
CONECT      H8     1 C8  
CONECT      H91    1 C9  
CONECT      H92    1 C9  
CONECT      H25    1 N2  
CONECT      H43    1 N4  
CONECT      H1     1 O2  
END   
HET    8S8             87
HETNAM     8S8 (3~{S},6~{S},7~{R},9~{a}~{R})-6-[[(3~{S},6~{R},8~{a}~{S
HETNAM   2 8S8 })-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]
HETNAM   3 8S8 -5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine
HETNAM   4 8S8 -6,2'-pyrrolidine]-3-yl]carbonylamino]-7-methyl-5-oxida
HETNAM   5 8S8 nylidene-1,2,3,6,7,9~{a}-hexahydropyrrolo[1,2-a]azepine
HETNAM   6 8S8 -3-carboxylic acid
FORMUL      8S8    C34 H40 Cl1 N5 O7

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science