Structure based on 3byo

Ideal structure
Name: 6-(2,6-dimethylphenyl)-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimido[5',4':5,6]pyrimido[1,2-a]benzimidazol-5(6h)-one
Formula: C31 H30 N8 O
Weight: 530.623
SMILES: "CN1CCN(CC1)c2ccc(Nc3ncc4C(=O)N(c5nc6ccccc6n5c4n3)c7c(C)cccc7C)cc2"
Spacial conformation based on PDB 3byo
RESIDUE   AM9     70
CONECT      C1     3 N1   N2   N3  
CONECT      N1     2 C1   C2  
CONECT      C2     3 N1   C3   N4  
CONECT      C3     3 C2   C4   C12 
CONECT      C4     3 C3   N2   H4  
CONECT      N2     2 C1   C4  
CONECT      N3     3 C1   C5   HN3 
CONECT      C5     3 N3   C6   C10 
CONECT      C6     3 C5   C7   H6  
CONECT      C7     3 C6   C8   H7  
CONECT      C8     3 C7   C9   N7  
CONECT      C9     3 C8   C10  H9  
CONECT      C10    3 C5   C9   H10 
CONECT      N4     3 C2   C11  C13 
CONECT      C11    3 N4   N5   N6  
CONECT      N5     3 C11  C12  C19 
CONECT      C12    3 C3   N5   O1  
CONECT      C13    3 N4   C14  C15 
CONECT      C14    3 C13  N6   C18 
CONECT      N6     2 C11  C14 
CONECT      C15    3 C13  C16  H15 
CONECT      C16    3 C15  C17  H16 
CONECT      C17    3 C16  C18  H17 
CONECT      C18    3 C14  C17  H18 
CONECT      O1     1 C12 
CONECT      C19    3 N5   C20  C24 
CONECT      C20    3 C19  C21  C26 
CONECT      C21    3 C20  C22  H21 
CONECT      C22    3 C21  C23  H22 
CONECT      C23    3 C22  C24  H23 
CONECT      C24    3 C19  C23  C25 
CONECT      C25    4 C24  H25  H25A H25B
CONECT      C26    4 C20  H26  H26A H26B
CONECT      N7     3 C8   C27  C30 
CONECT      C27    4 N7   C28  H27  H27A
CONECT      C28    4 C27  N8   H28  H28A
CONECT      N8     3 C28  C29  C31 
CONECT      C29    4 N8   C30  H29  H29A
CONECT      C30    4 N7   C29  H30  H30A
CONECT      C31    4 N8   H31  H31A H31B
CONECT      H4     1 C4  
CONECT      HN3    1 N3  
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      H9     1 C9  
CONECT      H10    1 C10 
CONECT      H15    1 C15 
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      H18    1 C18 
CONECT      H21    1 C21 
CONECT      H22    1 C22 
CONECT      H23    1 C23 
CONECT      H25    1 C25 
CONECT      H25A   1 C25 
CONECT      H25B   1 C25 
CONECT      H26    1 C26 
CONECT      H26A   1 C26 
CONECT      H26B   1 C26 
CONECT      H27    1 C27 
CONECT      H27A   1 C27 
CONECT      H28    1 C28 
CONECT      H28A   1 C28 
CONECT      H29    1 C29 
CONECT      H29A   1 C29 
CONECT      H30    1 C30 
CONECT      H30A   1 C30 
CONECT      H31    1 C31 
CONECT      H31A   1 C31 
CONECT      H31B   1 C31 
END   
HET    AM9             70
HETNAM     AM9 6-(2,6-dimethylphenyl)-2-{[4-(4-methylpiperazin-1-yl)ph
HETNAM   2 AM9 enyl]amino}pyrimido[5',4':5,6]pyrimido[1,2-a]benzimidaz
HETNAM   3 AM9 ol-5(6H)-one
FORMUL      AM9    C31 H30 N8 O1

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science