Structure based on 1fd5

Ideal structure
Name: macrocyclic-bis-9-amino-acridine
Formula: C46 H58 N8 O2 S2
Weight: 819.135
SMILES: "OC1CCC(=O)NCCSCc2cccc3c(NCCCNCCCCNCCCNc4c5ccccc5nc6c(CSCCN1)cccc46)c7ccccc7nc23"
Spacial conformation based on PDB 1fd5
RESIDUE   B9A    116
CONECT      C1A    3 C2A  CDA  H1A 
CONECT      C2A    3 C1A  C3A  H2A 
CONECT      C3A    3 C2A  C4A  H3A 
CONECT      C4A    3 C3A  CEA  C28 
CONECT      C5A    3 C6A  CBA  H5A 
CONECT      C6A    3 C5A  C7A  H6A 
CONECT      C7A    3 C6A  C8A  H7A 
CONECT      C8A    3 C7A  CCA  H8A 
CONECT      C9A    3 N9A  CCA  CDA 
CONECT      N9A    3 C9A  C15  H9A 
CONECT      NAA    2 CBA  CEA 
CONECT      CBA    3 C5A  NAA  CCA 
CONECT      CCA    3 C8A  C9A  CBA 
CONECT      CDA    3 C1A  C9A  CEA 
CONECT      CEA    3 C4A  NAA  CDA 
CONECT      C15    4 N9A  C16  H151 H152
CONECT      C16    4 C15  C17  H161 H162
CONECT      C17    4 C16  N18  H171 H172
CONECT      N18    3 C17  C19  H18 
CONECT      C19    4 N18  C20  H191 H192
CONECT      C20    4 C19  C21  H201 H202
CONECT      C21    4 C20  C22  H211 H212
CONECT      C22    4 C21  N23  H221 H222
CONECT      N23    3 C22  C24  H23 
CONECT      C24    4 N23  C25  H241 H242
CONECT      C25    4 C24  C26  H251 H252
CONECT      C26    4 C25  N9B  H261 H262
CONECT      C28    4 C4A  S29  H281 H282
CONECT      S29    2 C28  C30 
CONECT      C30    4 S29  C31  H301 H302
CONECT      C31    4 C30  N32  H311 H312
CONECT      N32    3 C31  C33  H32 
CONECT      C33    3 N32  O34  C35 
CONECT      O34    1 C33 
CONECT      C35    4 C33  C36  H351 H352
CONECT      C36    4 C35  C37  H361 H362
CONECT      C37    4 C36  O38  N39  HC37
CONECT      O38    2 C37  HO38
CONECT      N39    3 C37  C40  H39 
CONECT      C40    4 N39  C41  H401 H402
CONECT      C41    4 C40  S42  H411 H412
CONECT      S42    2 C41  C43 
CONECT      C43    4 S42  C5B  H431 H432
CONECT      C1B    3 C2B  CDB  H1B 
CONECT      C2B    3 C1B  C3B  H2B 
CONECT      C3B    3 C2B  C4B  H3B 
CONECT      C4B    3 C3B  CEB  H4B 
CONECT      C5B    3 C43  C6B  CBB 
CONECT      C6B    3 C5B  C7B  H6B 
CONECT      C7B    3 C6B  C8B  H7B 
CONECT      C8B    3 C7B  CCB  H8B 
CONECT      C9B    3 CCB  CDB  N9B 
CONECT      NAB    2 CBB  CEB 
CONECT      CBB    3 C5B  NAB  CCB 
CONECT      CCB    3 C8B  C9B  CBB 
CONECT      CDB    3 C1B  C9B  CEB 
CONECT      CEB    3 C4B  NAB  CDB 
CONECT      N9B    3 C26  C9B  H9B 
CONECT      H1A    1 C1A 
CONECT      H2A    1 C2A 
CONECT      H3A    1 C3A 
CONECT      H5A    1 C5A 
CONECT      H6A    1 C6A 
CONECT      H7A    1 C7A 
CONECT      H8A    1 C8A 
CONECT      H9A    1 N9A 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H161   1 C16 
CONECT      H162   1 C16 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H18    1 N18 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H23    1 N23 
CONECT      H241   1 C24 
CONECT      H242   1 C24 
CONECT      H251   1 C25 
CONECT      H252   1 C25 
CONECT      H261   1 C26 
CONECT      H262   1 C26 
CONECT      H281   1 C28 
CONECT      H282   1 C28 
CONECT      H301   1 C30 
CONECT      H302   1 C30 
CONECT      H311   1 C31 
CONECT      H312   1 C31 
CONECT      H32    1 N32 
CONECT      H351   1 C35 
CONECT      H352   1 C35 
CONECT      H361   1 C36 
CONECT      H362   1 C36 
CONECT      HC37   1 C37 
CONECT      HO38   1 O38 
CONECT      H39    1 N39 
CONECT      H401   1 C40 
CONECT      H402   1 C40 
CONECT      H411   1 C41 
CONECT      H412   1 C41 
CONECT      H431   1 C43 
CONECT      H432   1 C43 
CONECT      H1B    1 C1B 
CONECT      H2B    1 C2B 
CONECT      H3B    1 C3B 
CONECT      H4B    1 C4B 
CONECT      H6B    1 C6B 
CONECT      H7B    1 C7B 
CONECT      H8B    1 C8B 
CONECT      H9B    1 N9B 
END   
HET    B9A            116
HETNAM     B9A MACROCYCLIC-BIS-9-AMINO-ACRIDINE
FORMUL      B9A    C46 H58 N8 O2 S2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science