Structure based on 1xuj

Ideal structure
Name: bis(5-amidino-benzimidazolyl)methanone zinc
Formula: C17 H18 N8 O Zn
Weight: 415.787
SMILES: "[Zn++]|1|n2c([nH]c3cc(ccc23)C(N)N)C(=O)c4[nH]c5cc(ccc5n|14)C(N)N"
Spacial conformation based on PDB 1xuj
RESIDUE   BOZ     45
CONECT      C1     3 C2   C6   C7  
CONECT      C2     3 C1   C3   H2  
CONECT      C3     3 C2   C4   H3  
CONECT      C4     3 C3   C5   N3  
CONECT      C5     3 C4   C6   N4  
CONECT      C6     3 C1   C5   H6  
CONECT      C7     4 C1   N1   N2   H7  
CONECT      N1     3 C7   HN11 HN12
CONECT      N2     3 C7   HN21 HN22
CONECT      N3     3 C4   C8   ZN  
CONECT      N4     3 C5   C8   HN4 
CONECT      C8     3 N3   N4   C9  
CONECT      C1'    3 C2'  C6'  C7' 
CONECT      C2'    3 C1'  C3'  H2' 
CONECT      C3'    3 C2'  C4'  H3' 
CONECT      C4'    3 C3'  C5'  N3' 
CONECT      C5'    3 C4'  C6'  N4' 
CONECT      C6'    3 C1'  C5'  H6' 
CONECT      C7'    4 C1'  N1'  N2'  H7' 
CONECT      N1'    3 C7'  H1'1 H1'2
CONECT      N2'    3 C7'  H2'1 H2'2
CONECT      N3'    3 C4'  C8'  ZN  
CONECT      N4'    3 C5'  C8'  HN4'
CONECT      C8'    3 N3'  N4'  C9  
CONECT      C9     3 C8   C8'  O9  
CONECT      O9     1 C9  
CONECT      ZN     2 N3   N3' 
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      HN11   1 N1  
CONECT      HN12   1 N1  
CONECT      HN21   1 N2  
CONECT      HN22   1 N2  
CONECT      HN4    1 N4  
CONECT      H2'    1 C2' 
CONECT      H3'    1 C3' 
CONECT      H6'    1 C6' 
CONECT      H7'    1 C7' 
CONECT      H1'1   1 N1' 
CONECT      H1'2   1 N1' 
CONECT      H2'1   1 N2' 
CONECT      H2'2   1 N2' 
CONECT      HN4'   1 N4' 
END   
HET    BOZ             45
HETNAM     BOZ BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANONE ZINC
FORMUL      BOZ    C17 H18 N8 O Zn

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science