Structure based on 1lqd

Ideal structure
Name: 1-(3-carbamimidoyl-benzyl)-4-methyl-1h-indole-2-carboxylic acid 3,5-dimethyl-benzylamide
Formula: C27 H28 N4 O
Weight: 424.537
SMILES: "Cc1cc(C)cc(CNC(=O)c2cc3c(C)cccc3n2Cc4cccc(c4)C(N)=N)c1"
Spacial conformation based on PDB 1lqd
RESIDUE   CMI     60
CONECT      C1     3 C2   C6   HC1 
CONECT      C2     3 C1   C3   HC2 
CONECT      C3     3 C2   C4   N7  
CONECT      C4     3 C3   C5   C9  
CONECT      C5     3 C4   C6   C10 
CONECT      C6     3 C1   C5   HC6 
CONECT      N7     3 C3   C8   C17 
CONECT      C8     3 N7   C9   C11 
CONECT      C9     3 C4   C8   HC9 
CONECT      C10    4 C5   H101 H102 H103
CONECT      C11    3 C8   N12  O45 
CONECT      N12    3 C11  C13  H12 
CONECT      C13    4 N12  C14  H131 H132
CONECT      C14    3 C13  C26  C30 
CONECT      C17    4 N7   C18  H171 H172
CONECT      C18    3 C17  C21  C25 
CONECT      C21    3 C18  C22  H21 
CONECT      C22    3 C21  C23  H22 
CONECT      C23    3 C22  C24  H23 
CONECT      C24    3 C23  C25  C31 
CONECT      C25    3 C18  C24  H25 
CONECT      C26    3 C14  C27  H26 
CONECT      C27    3 C26  C28  C33 
CONECT      C28    3 C27  C29  H28 
CONECT      C29    3 C28  C30  C37 
CONECT      C30    3 C14  C29  H30 
CONECT      C31    3 C24  N32  N53 
CONECT      N32    3 C31  H321 H322
CONECT      C33    4 C27  H331 H332 H333
CONECT      C37    4 C29  H371 H372 H373
CONECT      O45    1 C11 
CONECT      N53    2 C31  H53 
CONECT      HC1    1 C1  
CONECT      HC2    1 C2  
CONECT      HC6    1 C6  
CONECT      HC9    1 C9  
CONECT      H101   1 C10 
CONECT      H102   1 C10 
CONECT      H103   1 C10 
CONECT      H12    1 N12 
CONECT      H131   1 C13 
CONECT      H132   1 C13 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H21    1 C21 
CONECT      H22    1 C22 
CONECT      H23    1 C23 
CONECT      H25    1 C25 
CONECT      H26    1 C26 
CONECT      H28    1 C28 
CONECT      H30    1 C30 
CONECT      H321   1 N32 
CONECT      H322   1 N32 
CONECT      H331   1 C33 
CONECT      H332   1 C33 
CONECT      H333   1 C33 
CONECT      H371   1 C37 
CONECT      H372   1 C37 
CONECT      H373   1 C37 
CONECT      H53    1 N53 
END   
HET    CMI             60
HETNAM     CMI 1-(3-CARBAMIMIDOYL-BENZYL)-4-METHYL-1H-INDOLE-2-CARBOXY
HETNAM   2 CMI LIC ACID 3,5-DIMETHYL-BENZYLAMIDE
FORMUL      CMI    C27 H28 N4 O1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science