Structure based on 482d

Ideal structure
Name: n-hydroxymethyl-n-(2-methoxyethyl)-daunomycin
Formula: C31 H39 N O12
Weight: 617.641
SMILES: "COCCN(CO)[CH]1C[CH](O[CH](C)[CH]1O)O[CH]2C[C](O)(Cc3c(O)c4c(O)c5cccc(OC)c5c(O)c4c(O)c23)C(C)=O"
Spacial conformation based on PDB 482d
RESIDUE   DM9     83
CONECT      C1     3 C2   C15  H1  
CONECT      C2     3 C1   C3   H2  
CONECT      C3     3 C2   C4   H3  
CONECT      C4     3 C3   O4   C16 
CONECT      O4     2 C4   C21 
CONECT      C5     3 O5   C16  C17 
CONECT      O5     2 C5   HO5 
CONECT      C6     3 O6   C17  C20 
CONECT      O6     2 C6   HO6 
CONECT      C7     4 O7   C8   C20  H7  
CONECT      O7     2 C7   C1' 
CONECT      C8     4 C7   C9   H81  H82 
CONECT      C9     4 C8   O9   C10  C13 
CONECT      O9     2 C9   HO9 
CONECT      C10    4 C9   C19  H101 H102
CONECT      C11    3 O11  C18  C19 
CONECT      O11    2 C11  HO11
CONECT      C12    3 O12  C15  C18 
CONECT      O12    2 C12  HO12
CONECT      C13    3 C9   O13  C14 
CONECT      O13    1 C13 
CONECT      C14    4 C13  H141 H142 H143
CONECT      C15    3 C1   C12  C16 
CONECT      C16    3 C4   C5   C15 
CONECT      C17    3 C5   C6   C18 
CONECT      C18    3 C11  C12  C17 
CONECT      C19    3 C10  C11  C20 
CONECT      C20    3 C6   C7   C19 
CONECT      C21    4 O4   H211 H212 H213
CONECT      C1'    4 O7   C2'  O5'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  C4'  N3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C4'  HO4'
CONECT      C5'    4 C4'  O5'  C6'  H5' 
CONECT      O5'    2 C1'  C5' 
CONECT      C6'    4 C5'  H6'1 H6'2 H6'3
CONECT      N3'    3 C3'  C31  C41 
CONECT      C31    4 N3'  O31  H311 H312
CONECT      O31    2 C31  HO31
CONECT      C41    4 N3'  C42  H411 H412
CONECT      C42    4 C41  O42  H421 H422
CONECT      O42    2 C42  C43 
CONECT      C43    4 O42  H431 H432 H433
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      HO5    1 O5  
CONECT      HO6    1 O6  
CONECT      H7     1 C7  
CONECT      H81    1 C8  
CONECT      H82    1 C8  
CONECT      HO9    1 O9  
CONECT      H101   1 C10 
CONECT      H102   1 C10 
CONECT      HO11   1 O11 
CONECT      HO12   1 O12 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H143   1 C14 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H213   1 C21 
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HO4'   1 O4' 
CONECT      H5'    1 C5' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H6'3   1 C6' 
CONECT      H311   1 C31 
CONECT      H312   1 C31 
CONECT      HO31   1 O31 
CONECT      H411   1 C41 
CONECT      H412   1 C41 
CONECT      H421   1 C42 
CONECT      H422   1 C42 
CONECT      H431   1 C43 
CONECT      H432   1 C43 
CONECT      H433   1 C43 
END   
HET    DM9             83
HETNAM     DM9 N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN
FORMUL      DM9    C31 H39 N1 O12

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science