Structure based on 4hra

Ideal structure
Name: 5'-[{cis-3-[2-(5-tert-butyl-1h-benzimidazol-2-yl)ethyl]cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine
Formula: C30 H42 N8 O3
Weight: 562.706
SMILES: "CC(C)N(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)[CH]4C[CH](CCc5[nH]c6ccc(cc6n5)C(C)(C)C)C4"
Spacial conformation based on PDB 4hra
RESIDUE   EP6     83
CONECT      C2     3 N3   N1   H1  
CONECT      C4     3 C5   N9   N3  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 C5   N1   N6  
CONECT      C8     3 N9   N7   H2  
CONECT      NAV    3 CBB  CBA  H3  
CONECT      CBB    3 NAV  CAK  CBC 
CONECT      CAK    3 CBB  CAI  H4  
CONECT      CAI    3 CAK  CAZ  H5  
CONECT      CAZ    3 CAI  CBO  CAM 
CONECT      CBO    4 CAZ  CAD  CAE  CAC 
CONECT      CAD    4 CBO  H6   H7   H8  
CONECT      CAE    4 CBO  H9   H10  H11 
CONECT      CAC    4 CBO  H12  H13  H14 
CONECT      CAM    3 CAZ  CBC  H15 
CONECT      CBC    3 CBB  CAM  NAW 
CONECT      NAW    2 CBC  CBA 
CONECT      CBA    3 NAV  NAW  CAN 
CONECT      CAN    4 CBA  CAO  H17  H18 
CONECT      CAO    4 CAN  CBG  H19  H20 
CONECT      CBG    4 CAO  CAQ  CAP  H21 
CONECT      CAQ    4 CBG  CBH  H22  H23 
CONECT      CAP    4 CBG  CBH  H24  H25 
CONECT      CBH    4 CAQ  CAP  NBM  H26 
CONECT      NBM    3 CBH  CBF  CAR 
CONECT      CBF    4 NBM  CAB  CAA  H28 
CONECT      CAB    4 CBF  H29  H30  H31 
CONECT      CAA    4 CBF  H32  H33  H34 
CONECT      CAR    4 NBM  CBK  H35  H36 
CONECT      CBK    4 CAR  OAX  CBI  H37 
CONECT      OAX    2 CBK  CBL 
CONECT      CBI    4 CBK  OAG  CBJ  H38 
CONECT      OAG    2 CBI  H39 
CONECT      CBJ    4 CBI  OAH  CBL  H40 
CONECT      OAH    2 CBJ  H41 
CONECT      CBL    4 OAX  CBJ  N9   H42 
CONECT      N9     3 C4   C8   CBL 
CONECT      N7     2 C5   C8  
CONECT      N3     2 C2   C4  
CONECT      N1     2 C2   C6  
CONECT      N6     3 C6   H43  H44 
CONECT      H1     1 C2  
CONECT      H2     1 C8  
CONECT      H3     1 NAV 
CONECT      H4     1 CAK 
CONECT      H5     1 CAI 
CONECT      H6     1 CAD 
CONECT      H7     1 CAD 
CONECT      H8     1 CAD 
CONECT      H9     1 CAE 
CONECT      H10    1 CAE 
CONECT      H11    1 CAE 
CONECT      H12    1 CAC 
CONECT      H13    1 CAC 
CONECT      H14    1 CAC 
CONECT      H15    1 CAM 
CONECT      H17    1 CAN 
CONECT      H18    1 CAN 
CONECT      H19    1 CAO 
CONECT      H20    1 CAO 
CONECT      H21    1 CBG 
CONECT      H22    1 CAQ 
CONECT      H23    1 CAQ 
CONECT      H24    1 CAP 
CONECT      H25    1 CAP 
CONECT      H26    1 CBH 
CONECT      H28    1 CBF 
CONECT      H29    1 CAB 
CONECT      H30    1 CAB 
CONECT      H31    1 CAB 
CONECT      H32    1 CAA 
CONECT      H33    1 CAA 
CONECT      H34    1 CAA 
CONECT      H35    1 CAR 
CONECT      H36    1 CAR 
CONECT      H37    1 CBK 
CONECT      H38    1 CBI 
CONECT      H39    1 OAG 
CONECT      H40    1 CBJ 
CONECT      H41    1 OAH 
CONECT      H42    1 CBL 
CONECT      H43    1 N6  
CONECT      H44    1 N6  
END   
HET    EP6             83
HETNAM     EP6 5'-[{cis-3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]
HETNAM   2 EP6 cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine
FORMUL      EP6    C30 H42 N8 O3

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science