Structure based on 1gup

Ideal structure
Name: galactose-uridine-5'-diphosphate
Formula: C15 H24 N2 O17 P2
Weight: 566.302
SMILES: "OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O"
Spacial conformation based on PDB 1gup.
Also present in other 44 PDB entries.
RESIDUE   GDU     60
CONECT      N1     3 C2   C6   C1D 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   C5   O4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      O4     1 C4  
CONECT      C1D    4 N1   C2D  O4D  H1D 
CONECT      C2D    4 C1D  O2D  C3D  H2D 
CONECT      O2D    2 C2D  HO2'
CONECT      C3D    4 C2D  C4D  O3D  H3D 
CONECT      C4D    4 C3D  O4D  C5D  H4D 
CONECT      O4D    2 C1D  C4D 
CONECT      O3D    2 C3D  HO3'
CONECT      C5D    4 C4D  O5D  H5'1 H5'2
CONECT      O5D    2 C5D  PA  
CONECT      PA     4 O5D  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HOA2
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HOB2
CONECT      O3B    2 PB   C1' 
CONECT      C1'    4 O3B  C2'  O5'  H1' 
CONECT      C2'    4 C1'  C3'  O2'  H2' 
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  C5'  O4'  H4' 
CONECT      C5'    4 C4'  C6'  O5'  H5' 
CONECT      C6'    4 C5'  O6'  H6'1 H6'2
CONECT      O2'    2 C2'  HO2A
CONECT      O3'    2 C3'  HO3A
CONECT      O4'    2 C4'  HO4'
CONECT      O5'    2 C1'  C5' 
CONECT      O6'    2 C6'  HO6'
CONECT      HN3    1 N3  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H1D    1 C1D 
CONECT      H2D    1 C2D 
CONECT      HO2'   1 O2D 
CONECT      H3D    1 C3D 
CONECT      H4D    1 C4D 
CONECT      HO3'   1 O3D 
CONECT      H5'1   1 C5D 
CONECT      H5'2   1 C5D 
CONECT      HOA2   1 O2A 
CONECT      HOB2   1 O2B 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      HO2A   1 O2' 
CONECT      HO3A   1 O3' 
CONECT      HO4'   1 O4' 
CONECT      HO6'   1 O6' 
END   
HET    GDU             60
HETSYN     GDU UDP-D-GALACTOPYRANOSE
HETNAM     GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE
FORMUL      GDU    C15 H24 N2 O17 P2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science