Structure based on 1r3g

Ideal structure
Name: 2'-o-[(2-guanidinium)ethyl]-5-methyluridine 5'-monophosphate
Formula: C13 H24 N5 O9 P
Weight: 425.332
SMILES: "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCCNC(N)N)C(=O)NC1=O"
Spacial conformation based on PDB 1r3g
RESIDUE   GMU     52
CONECT      OP3    2 P    H3P 
CONECT      P      4 OP3  OP2  O5'  OP1 
CONECT      OP2    2 P    H2P 
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H1  
CONECT      O3'    2 C3'  H3' 
CONECT      C2'    4 C3'  C1'  O2'  H2' 
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C6     3 N1   C5   H6  
CONECT      C5     3 C6   C5M  C4  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      C4     3 N3   C5   O4  
CONECT      O4     1 C4  
CONECT      O2'    2 C2'  CA' 
CONECT      CA'    4 O2'  CB'  HA'1 HA'2
CONECT      CB'    4 CA'  NC'  HB'1 HB'2
CONECT      NC'    3 CB'  CD'  HC' 
CONECT      CD'    4 NC'  NE'  NF'  HD' 
CONECT      NE'    3 CD'  HE'1 HE'2
CONECT      NF'    3 CD'  HF'1 HF'2
CONECT      OP1    1 P   
CONECT      H3P    1 OP3 
CONECT      H2P    1 OP2 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1     1 C3' 
CONECT      H3'    1 O3' 
CONECT      H2'    1 C2' 
CONECT      H1'    1 C1' 
CONECT      HN3    1 N3  
CONECT      H6     1 C6  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      HA'1   1 CA' 
CONECT      HA'2   1 CA' 
CONECT      HB'1   1 CB' 
CONECT      HB'2   1 CB' 
CONECT      HC'    1 NC' 
CONECT      HD'    1 CD' 
CONECT      HE'1   1 NE' 
CONECT      HE'2   1 NE' 
CONECT      HF'1   1 NF' 
CONECT      HF'2   1 NF' 
END   
HET    GMU             52
HETNAM     GMU 2'-O-[(2-GUANIDINIUM)ETHYL]-5-METHYLURIDINE 5'-MONOPHOS
HETNAM   2 GMU PHATE
FORMUL      GMU    C13 H24 N5 O9 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science