Structure based on 3mdc

Ideal structure
Name: 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate)
Formula: C9 H14 F2 N3 O13 P3
Weight: 503.138
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)C2(F)F"
Spacial conformation based on PDB 3mdc.
Also present on 6dw5, 8fvd
RESIDUE   GTF     44
CONECT      F1     1 C2' 
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   O2   N3  
CONECT      F2     1 C2' 
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   H1   H2  
CONECT      C5     3 C4   C6   H3  
CONECT      C6     3 N1   C5   H4  
CONECT      PA     4 O1A  O2A  O3A  O5' 
CONECT      PB     4 O1B  O2B  O3A  O3B 
CONECT      PG     4 O1G  O2G  O3B  O3G 
CONECT      C1'    4 N1   C2'  O4'  H5  
CONECT      O1A    2 PA   H6  
CONECT      O1B    1 PB  
CONECT      O1G    2 PG   H7  
CONECT      C2'    4 F1   F2   C1'  C3' 
CONECT      O2A    1 PA  
CONECT      O2B    2 PB   H8  
CONECT      O2G    2 PG   H9  
CONECT      C3'    4 C2'  O3'  C4'  H10 
CONECT      O3'    2 C3'  H11 
CONECT      O3A    2 PA   PB  
CONECT      O3B    2 PB   PG  
CONECT      O3G    1 PG  
CONECT      C4'    4 C3'  O4'  C5'  H12 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H13  H14 
CONECT      O5'    2 PA   C5' 
CONECT      H1     1 N4  
CONECT      H2     1 N4  
CONECT      H3     1 C5  
CONECT      H4     1 C6  
CONECT      H5     1 C1' 
CONECT      H6     1 O1A 
CONECT      H7     1 O1G 
CONECT      H8     1 O2B 
CONECT      H9     1 O2G 
CONECT      H10    1 C3' 
CONECT      H11    1 O3' 
CONECT      H12    1 C4' 
CONECT      H13    1 C5' 
CONECT      H14    1 C5' 
END   
HET    GTF             44
HETSYN     GTF Gemcitabine-TRIPHOSPHATE
HETNAM     GTF 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triph
HETNAM   2 GTF osphate)
FORMUL      GTF    C9 H14 F2 N3 O13 P3

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science