Structure based on 1d46

Ideal structure
Name: 2'-(4-hydroxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi-benzimidazole
Formula: C25 H24 N6 O
Weight: 424.498
SMILES: "CN1CCN(CC1)c2ccc3nc([nH]c3c2)c4ccc5nc([nH]c5c4)c6ccc(O)cc6"
Spacial conformation based on PDB 1d46.
Also present in other 18 PDB entries.
RESIDUE   HT      56
CONECT      O1     2 C1   HO1 
CONECT      C1     3 O1   C2   C6  
CONECT      C4     3 C3   C5   C7  
CONECT      C2     3 C1   C3   H2  
CONECT      C3     3 C4   C2   H3  
CONECT      C6     3 C1   C5   H6  
CONECT      C5     3 C4   C6   H5  
CONECT      C7     3 C4   N1   N2  
CONECT      N1     3 C7   C8   HN1 
CONECT      C8     3 N1   C9   C13 
CONECT      C9     3 C8   N2   C10 
CONECT      N2     2 C7   C9  
CONECT      C10    3 C9   C11  H10 
CONECT      C11    3 C10  C12  H11 
CONECT      C12    3 C11  C13  C14 
CONECT      C13    3 C8   C12  H13 
CONECT      C14    3 C12  N3   N4  
CONECT      N3     3 C14  C15  HN3 
CONECT      C15    3 N3   C16  C20 
CONECT      C16    3 C15  N4   C17 
CONECT      N4     2 C14  C16 
CONECT      C17    3 C16  C18  H17 
CONECT      C18    3 C17  C19  H18 
CONECT      C19    3 C18  C20  N5  
CONECT      C20    3 C15  C19  H20 
CONECT      N5     3 C19  C21  C24 
CONECT      C21    4 N5   C22  H211 H212
CONECT      C22    4 C21  N6   H221 H222
CONECT      N6     3 C22  C23  C25 
CONECT      C23    4 N6   C24  H231 H232
CONECT      C24    4 N5   C23  H241 H242
CONECT      C25    4 N6   H253 H252 H251
CONECT      HO1    1 O1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HN1    1 N1  
CONECT      H10    1 C10 
CONECT      H11    1 C11 
CONECT      H13    1 C13 
CONECT      HN3    1 N3  
CONECT      H17    1 C17 
CONECT      H18    1 C18 
CONECT      H20    1 C20 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      H241   1 C24 
CONECT      H242   1 C24 
CONECT      H253   1 C25 
CONECT      H252   1 C25 
CONECT      H251   1 C25 
END   
HET    HT              56
HETSYN     HT  HOECHST 33258
HETNAM     HT  2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI
HETNAM   2 HT  -BENZIMIDAZOLE
FORMUL      HT     C25 H24 N6 O1

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Bioinformatics Unit
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