Structure based on 1h0q

Ideal structure
Name: [(1r,3r,4r,7s)-7-hydroxy-3-(5-methylcytosin-1-yl)-2,5-dioxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate
Formula: C11 H16 N3 O8 P
Weight: 349.234
SMILES: "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)N=C1N"
Spacial conformation based on PDB 1h0q.
Also present in other 57 PDB entries.
RESIDUE   LCC     39
CONECT      O5'    2 C5'  P   
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  C6' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N1   C2'  H1' 
CONECT      N1     3 C1'  C6   C2  
CONECT      C6     3 N1   C5   H6  
CONECT      C5     3 C6   C5M  C4  
CONECT      C5M    4 C5   H5M1 H5M2 H5M3
CONECT      C4     3 C5   N4   N3  
CONECT      N4     3 C4   H41  H42 
CONECT      N3     2 C4   C2  
CONECT      C2     3 N1   N3   O2  
CONECT      O2     1 C2  
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      C2'    4 C1'  C3'  O2'  H2'1
CONECT      O2'    2 C2'  C6' 
CONECT      O3'    2 C3'  H3T 
CONECT      C6'    4 C4'  O2'  H6'1 H6'2
CONECT      P      4 O5'  O1P  O2P  OXT 
CONECT      O1P    2 P    H1P 
CONECT      O2P    1 P   
CONECT      OXT    2 P    HXT 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H1'    1 C1' 
CONECT      H6     1 C6  
CONECT      H5M1   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M3   1 C5M 
CONECT      H41    1 N4  
CONECT      H42    1 N4  
CONECT      H3'    1 C3' 
CONECT      H2'1   1 C2' 
CONECT      H3T    1 O3' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H1P    1 O1P 
CONECT      HXT    1 OXT 
END   
HET    LCC             39
HETNAM     LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-D
HETNAM   2 LCC IOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL      LCC    C11 H16 N3 O8 P1

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science