Structure based on 1h0q | Ideal structure |
|
Name: [(1r,3r,4r,7s)-7-hydroxy-3-(5-methylcytosin-1-yl)-2,5-dioxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate |
Formula: C11 H16 N3 O8 P |
Weight: 349.234 |
SMILES: "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)N=C1N" |
Spacial conformation based on PDB
1h0q. Also present in other
57 PDB entries. |
RESIDUE LCC 39
CONECT O5' 2 C5' P
CONECT C5' 4 O5' C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' C6'
CONECT O4' 2 C4' C1'
CONECT C1' 4 O4' N1 C2' H1'
CONECT N1 3 C1' C6 C2
CONECT C6 3 N1 C5 H6
CONECT C5 3 C6 C5M C4
CONECT C5M 4 C5 H5M1 H5M2 H5M3
CONECT C4 3 C5 N4 N3
CONECT N4 3 C4 H41 H42
CONECT N3 2 C4 C2
CONECT C2 3 N1 N3 O2
CONECT O2 1 C2
CONECT C3' 4 C4' C2' O3' H3'
CONECT C2' 4 C1' C3' O2' H2'1
CONECT O2' 2 C2' C6'
CONECT O3' 2 C3' H3T
CONECT C6' 4 C4' O2' H6'1 H6'2
CONECT P 4 O5' O1P O2P OXT
CONECT O1P 2 P H1P
CONECT O2P 1 P
CONECT OXT 2 P HXT
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H1' 1 C1'
CONECT H6 1 C6
CONECT H5M1 1 C5M
CONECT H5M2 1 C5M
CONECT H5M3 1 C5M
CONECT H41 1 N4
CONECT H42 1 N4
CONECT H3' 1 C3'
CONECT H2'1 1 C2'
CONECT H3T 1 O3'
CONECT H6'1 1 C6'
CONECT H6'2 1 C6'
CONECT H1P 1 O1P
CONECT HXT 1 OXT
END
HET LCC 39
HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-D
HETNAM 2 LCC IOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL LCC C11 H16 N3 O8 P1