Structure based on 1dxr

Ideal structure
Name: menaquinone-9
Formula: C56 H80 O2
Weight: 785.233
SMILES: "CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC1=C(C)C(=O)c2ccccc2C1=O"
Spacial conformation based on PDB 1dxr.
Also present in other 26 PDB entries.
RESIDUE   MQ9    138
CONECT      C5     3 C5M  C4   C6  
CONECT      C5M    4 C5   H5M3 H5M2 H5M1
CONECT      C4     3 C5   O4   C3  
CONECT      O4     1 C4  
CONECT      C3     3 C4   C2   C3A 
CONECT      C2     3 C3   C1   C3D 
CONECT      C1     3 C2   O1   C6  
CONECT      O1     1 C1  
CONECT      C6     3 C5   C1   C7  
CONECT      C3A    3 C3   C3B  H3A 
CONECT      C3B    3 C3A  C3C  H3B 
CONECT      C3C    3 C3B  C3D  H3C 
CONECT      C3D    3 C2   C3C  H3D 
CONECT      C7     4 C6   C8   H72  H71 
CONECT      C8     3 C7   C9   H8  
CONECT      C9     3 C8   C10  C11 
CONECT      C10    4 C9   H103 H102 H101
CONECT      C11    4 C9   C12  H112 H111
CONECT      C12    4 C11  C13  H121 H122
CONECT      C13    3 C12  C14  H13 
CONECT      C14    3 C13  C15  C16 
CONECT      C15    4 C14  H153 H152 H151
CONECT      C16    4 C14  C17  H162 H161
CONECT      C17    4 C16  C18  H172 H171
CONECT      C18    3 C17  C19  H18 
CONECT      C19    3 C18  C20  C21 
CONECT      C20    4 C19  H203 H202 H201
CONECT      C21    4 C19  C22  H212 H211
CONECT      C22    4 C21  C23  H222 H221
CONECT      C23    3 C22  C24  H23 
CONECT      C24    3 C23  C25  C26 
CONECT      C25    4 C24  H253 H252 H251
CONECT      C26    4 C24  C27  H262 H261
CONECT      C27    4 C26  C28  H272 H271
CONECT      C28    3 C27  C29  H28 
CONECT      C29    3 C28  C30  C31 
CONECT      C30    4 C29  H303 H302 H301
CONECT      C31    4 C29  C32  H312 H311
CONECT      C32    4 C31  C33  H321 H322
CONECT      C33    3 C32  C34  H33 
CONECT      C34    3 C33  C35  C36 
CONECT      C35    4 C34  H353 H352 H351
CONECT      C36    4 C34  C37  H362 H361
CONECT      C37    4 C36  C38  H372 H371
CONECT      C38    3 C37  C39  H38 
CONECT      C39    3 C38  C40  C41 
CONECT      C40    4 C39  H403 H402 H401
CONECT      C41    4 C39  C42  H412 H411
CONECT      C42    4 C41  C43  H422 H421
CONECT      C43    3 C42  C44  H43 
CONECT      C44    3 C43  C45  C46 
CONECT      C45    4 C44  H453 H452 H451
CONECT      C46    4 C44  C47  H462 H461
CONECT      C47    4 C46  C48  H472 H471
CONECT      C48    3 C47  C49  H48 
CONECT      C49    3 C48  C50  C51 
CONECT      C50    4 C49  H503 H502 H501
CONECT      C51    4 C49  H513 H512 H511
CONECT      H5M3   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M1   1 C5M 
CONECT      H3A    1 C3A 
CONECT      H3B    1 C3B 
CONECT      H3C    1 C3C 
CONECT      H3D    1 C3D 
CONECT      H72    1 C7  
CONECT      H71    1 C7  
CONECT      H8     1 C8  
CONECT      H103   1 C10 
CONECT      H102   1 C10 
CONECT      H101   1 C10 
CONECT      H112   1 C11 
CONECT      H111   1 C11 
CONECT      H121   1 C12 
CONECT      H122   1 C12 
CONECT      H13    1 C13 
CONECT      H153   1 C15 
CONECT      H152   1 C15 
CONECT      H151   1 C15 
CONECT      H162   1 C16 
CONECT      H161   1 C16 
CONECT      H172   1 C17 
CONECT      H171   1 C17 
CONECT      H18    1 C18 
CONECT      H203   1 C20 
CONECT      H202   1 C20 
CONECT      H201   1 C20 
CONECT      H212   1 C21 
CONECT      H211   1 C21 
CONECT      H222   1 C22 
CONECT      H221   1 C22 
CONECT      H23    1 C23 
CONECT      H253   1 C25 
CONECT      H252   1 C25 
CONECT      H251   1 C25 
CONECT      H262   1 C26 
CONECT      H261   1 C26 
CONECT      H272   1 C27 
CONECT      H271   1 C27 
CONECT      H28    1 C28 
CONECT      H303   1 C30 
CONECT      H302   1 C30 
CONECT      H301   1 C30 
CONECT      H312   1 C31 
CONECT      H311   1 C31 
CONECT      H321   1 C32 
CONECT      H322   1 C32 
CONECT      H33    1 C33 
CONECT      H353   1 C35 
CONECT      H352   1 C35 
CONECT      H351   1 C35 
CONECT      H362   1 C36 
CONECT      H361   1 C36 
CONECT      H372   1 C37 
CONECT      H371   1 C37 
CONECT      H38    1 C38 
CONECT      H403   1 C40 
CONECT      H402   1 C40 
CONECT      H401   1 C40 
CONECT      H412   1 C41 
CONECT      H411   1 C41 
CONECT      H422   1 C42 
CONECT      H421   1 C42 
CONECT      H43    1 C43 
CONECT      H453   1 C45 
CONECT      H452   1 C45 
CONECT      H451   1 C45 
CONECT      H462   1 C46 
CONECT      H461   1 C46 
CONECT      H472   1 C47 
CONECT      H471   1 C47 
CONECT      H48    1 C48 
CONECT      H503   1 C50 
CONECT      H502   1 C50 
CONECT      H501   1 C50 
CONECT      H513   1 C51 
CONECT      H512   1 C51 
CONECT      H511   1 C51 
END   
HET    MQ9            138
HETNAM     MQ9 MENAQUINONE-9
FORMUL      MQ9    C56 H80 O2

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