Structure based on 1n1e

Ideal structure
Name: adenosine 5'-(trihydrogen diphosphate) p'-5'-ester with 3-(aminocarbonyl)-4-(1-hydroxyl-2-oxo-3-phosphonooxy-propyl)-1-beta-d-ribofuranosylpyridinium inner salt
Formula: C24 H32 N7 O20 P3
Weight: 831.467
SMILES: "NC(=O)c1c[n+](ccc1[CH](O)C(=O)CO[P](O)(O)=O)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"
Spacial conformation based on PDB 1n1e
RESIDUE   NDE     86
CONECT      O7N    1 C7N 
CONECT      C7N    3 O7N  N7N  C3N 
CONECT      N7N    3 C7N  H71N H72N
CONECT      C3N    3 C7N  C4N  C2N 
CONECT      C4N    3 C3N  C5N  C3  
CONECT      C5N    3 C4N  C6N  H5N 
CONECT      C6N    3 C5N  N1N  H6N 
CONECT      C2N    3 C3N  N1N  H2N 
CONECT      N1N    3 C6N  C2N  C1D 
CONECT      C1D    4 N1N  C2D  O4D  H1D 
CONECT      C2D    4 C1D  O2D  C3D  H2D 
CONECT      O2D    2 C2D  HO2N
CONECT      C3D    4 C2D  O3D  C4D  H3D 
CONECT      O3D    2 C3D  HO3N
CONECT      O4D    2 C1D  C4D 
CONECT      C4D    4 C3D  O4D  C5D  H4D 
CONECT      C5D    4 C4D  O5D  H51N H52N
CONECT      O5D    2 C5D  PN  
CONECT      PN     4 O5D  O1N  O2N  O3  
CONECT      O1N    1 PN  
CONECT      O2N    1 PN  
CONECT      PA     4 O1A  O3   O2A  O5B 
CONECT      O1A    1 PA  
CONECT      O3     2 PN   PA  
CONECT      O2A    2 PA   HOA2
CONECT      O5B    2 PA   C5B 
CONECT      C5B    4 O5B  C4B  H51A H52A
CONECT      C4B    4 C5B  O4B  C3B  H4B 
CONECT      O4B    2 C4B  C1B 
CONECT      C1B    4 O4B  C2B  N9A  H1B 
CONECT      C2B    4 C1B  O2B  C3B  H2B 
CONECT      O2B    2 C2B  HO2A
CONECT      C3B    4 C4B  C2B  O3B  H3B 
CONECT      O3B    2 C3B  HO3A
CONECT      N9A    3 C1B  C8A  C4A 
CONECT      C8A    3 N9A  N7A  H8A 
CONECT      N7A    2 C8A  C5A 
CONECT      C5A    3 N7A  C6A  C4A 
CONECT      C6A    3 C5A  N6A  N1A 
CONECT      N6A    3 C6A  H61A H62A
CONECT      C4A    3 N9A  C5A  N3A 
CONECT      N3A    2 C4A  C2A 
CONECT      C2A    3 N3A  N1A  H2A 
CONECT      N1A    2 C6A  C2A 
CONECT      P      4 O1P  O2P  O3P  O1  
CONECT      O1P    1 P   
CONECT      O2P    2 P    HOP2
CONECT      O3P    2 P    HOP3
CONECT      O1     2 P    C1  
CONECT      C1     4 O1   C2   H11  H12 
CONECT      C2     3 C1   O2   C3  
CONECT      O2     1 C2  
CONECT      C3     4 C4N  C2   O31  H31 
CONECT      O31    2 C3   H311
CONECT      H71N   1 N7N 
CONECT      H72N   1 N7N 
CONECT      H5N    1 C5N 
CONECT      H6N    1 C6N 
CONECT      H2N    1 C2N 
CONECT      H1D    1 C1D 
CONECT      H2D    1 C2D 
CONECT      HO2N   1 O2D 
CONECT      H3D    1 C3D 
CONECT      HO3N   1 O3D 
CONECT      H4D    1 C4D 
CONECT      H51N   1 C5D 
CONECT      H52N   1 C5D 
CONECT      HOA2   1 O2A 
CONECT      H51A   1 C5B 
CONECT      H52A   1 C5B 
CONECT      H4B    1 C4B 
CONECT      H1B    1 C1B 
CONECT      H2B    1 C2B 
CONECT      HO2A   1 O2B 
CONECT      H3B    1 C3B 
CONECT      HO3A   1 O3B 
CONECT      H8A    1 C8A 
CONECT      H61A   1 N6A 
CONECT      H62A   1 N6A 
CONECT      H2A    1 C2A 
CONECT      HOP2   1 O2P 
CONECT      HOP3   1 O3P 
CONECT      H11    1 C1  
CONECT      H12    1 C1  
CONECT      H31    1 C3  
CONECT      H311   1 O31 
END   
HET    NDE             86
HETSYN     NDE NAD WITH (1-HYDROXYL-2-OXO-3-PHOSPHONOOXY-PROPANE)
HETNAM     NDE ADENOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) P'-5'-ESTER WITH
HETNAM   2 NDE  3-(AMINOCARBONYL)-4-(1-HYDROXYL-2-OXO-3-PHOSPHONOOXY-P
HETNAM   3 NDE ROPYL)-1-BETA-D-RIBOFURANOSYLPYRIDINIUM INNER SALT
FORMUL      NDE    C24 H32 N7 O20 P3

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science