Structure based on 2fcy

Ideal structure
Name: neomycin
Formula: C23 H46 N6 O13
Weight: 614.644
SMILES: "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N)[CH]3O)[CH](N)[CH](O)[CH]1O"
Spacial conformation based on PDB 2fcy.
Also present in other 23 PDB entries.
RESIDUE   NMY     88
CONECT      C1     4 O1   C2   O5   H1  
CONECT      O1     2 C1   C10 
CONECT      C2     4 C1   N2   C3   H2  
CONECT      N2     3 C2   HN21 HN22
CONECT      C3     4 C2   O3   C4   H3  
CONECT      O3     2 C3   HO3 
CONECT      C4     4 C3   O4   C5   H4  
CONECT      O4     2 C4   HO4 
CONECT      C5     4 C4   O5   C6   H5  
CONECT      O5     2 C1   C5  
CONECT      C6     4 C5   N6   H61  H62 
CONECT      C7     4 N7   C12  C8   H7  
CONECT      N7     3 C7   H71  H72 
CONECT      C12    4 C7   C11  O12  H12 
CONECT      C11    4 C12  O11  C10  H11 
CONECT      O11    2 C11  C13 
CONECT      C10    4 O1   C11  C9   H10 
CONECT      C9     4 C10  N9   C8   H9  
CONECT      N9     3 C9   H91  H92 
CONECT      C8     4 C7   C9   H81  H82 
CONECT      C13    4 O11  C14  O16  H13 
CONECT      C14    4 C13  C15  O14  H14 
CONECT      C15    4 C14  C16  O18  H15 
CONECT      C16    4 C15  O16  C17  H16 
CONECT      O16    2 C13  C16 
CONECT      C17    4 C16  O17  H171 H172
CONECT      C21    4 C20  C22  O21  H21 
CONECT      C20    4 C21  C19  O20  H20 
CONECT      C19    4 C20  C18  N23  H19 
CONECT      C18    4 C19  O18  O22  H18 
CONECT      O18    2 C15  C18 
CONECT      C22    4 C21  O22  C23  H22 
CONECT      O22    2 C18  C22 
CONECT      C23    4 C22  N19  H231 H232
CONECT      N6     3 C6   HN61 HN62
CONECT      O14    2 C14  HO41
CONECT      O20    2 C20  HO22
CONECT      O21    2 C21  HO21
CONECT      O17    2 C17  H17 
CONECT      O12    2 C12  HO12
CONECT      N19    3 C23  H191 H192
CONECT      N23    3 C19  HN31 HN32
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      HN21   1 N2  
CONECT      HN22   1 N2  
CONECT      H3     1 C3  
CONECT      HO3    1 O3  
CONECT      H4     1 C4  
CONECT      HO4    1 O4  
CONECT      H5     1 C5  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
CONECT      H7     1 C7  
CONECT      H71    1 N7  
CONECT      H72    1 N7  
CONECT      H12    1 C12 
CONECT      H11    1 C11 
CONECT      H10    1 C10 
CONECT      H9     1 C9  
CONECT      H91    1 N9  
CONECT      H92    1 N9  
CONECT      H81    1 C8  
CONECT      H82    1 C8  
CONECT      H13    1 C13 
CONECT      H14    1 C14 
CONECT      H15    1 C15 
CONECT      H16    1 C16 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H21    1 C21 
CONECT      H20    1 C20 
CONECT      H19    1 C19 
CONECT      H18    1 C18 
CONECT      H22    1 C22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      HN61   1 N6  
CONECT      HN62   1 N6  
CONECT      HO41   1 O14 
CONECT      HO22   1 O20 
CONECT      HO21   1 O21 
CONECT      H17    1 O17 
CONECT      HO12   1 O12 
CONECT      H191   1 N19 
CONECT      H192   1 N19 
CONECT      HN31   1 N23 
CONECT      HN32   1 N23 
END   
HET    NMY             88
HETSYN     NMY MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN
HETNAM     NMY NEOMYCIN
FORMUL      NMY    C23 H46 N6 O13

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science