Structure based on 1u43

Ideal structure
Name: 4-diphosphocytidyl-2-c-methyl-d-erythritol 2-phosphate
Formula: C14 H26 N3 O17 P3
Weight: 601.287
SMILES: "C[C](CO)(O[P](O)(O)=O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N"
Spacial conformation based on PDB 1u43
RESIDUE   SUD     63
CONECT      C1     4 O2B  C27  H11  H12 
CONECT      N1     3 C3   C6   C1' 
CONECT      C3     3 N1   N3   O8  
CONECT      N3     2 C3   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O8     1 C3  
CONECT      N4     3 C4   HN41 HN42
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  H1  
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  H2  
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2A 
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 C1   PB  
CONECT      O3B    2 PB   H3B 
CONECT      C27    4 C1   C28  O33  H27 
CONECT      C28    4 C27  C29  O31  C32 
CONECT      C29    4 C28  O30  H291 H292
CONECT      O30    2 C29  H30 
CONECT      O31    2 C28  P34 
CONECT      C32    4 C28  H321 H322 H323
CONECT      O33    2 C27  H33 
CONECT      P34    4 O31  O35  O36  O37 
CONECT      O35    1 P34 
CONECT      O36    2 P34  H36 
CONECT      O37    2 P34  H37 
CONECT      H11    1 C1  
CONECT      H12    1 C1  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H1     1 O2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H2     1 O3' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H2A    1 O2A 
CONECT      H3B    1 O3B 
CONECT      H27    1 C27 
CONECT      H291   1 C29 
CONECT      H292   1 C29 
CONECT      H30    1 O30 
CONECT      H321   1 C32 
CONECT      H322   1 C32 
CONECT      H323   1 C32 
CONECT      H33    1 O33 
CONECT      H36    1 O36 
CONECT      H37    1 O37 
END   
HET    SUD             63
HETNAM     SUD 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE
FORMUL      SUD    C14 H26 N3 O17 P3

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science