Hetgroup: T48

Structure based on 291d

Ideal structure

Name: 6'-alpha-hydroxy carbocyclic thymidine 5'-monophosphate

Formula: C11 H17 N2 O8 P

Weight: 336.235

SMILES: "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)[CH]2O)C(=O)NC1=O"

Spacial conformation based on PDB 291d

RESIDUE   T48     39
CONECT      O3P    2 P    H3P 
CONECT      P      4 O3P  O1P  O2P  O5' 
CONECT      O1P    1 P   
CONECT      O2P    2 P    H2P 
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  C3'  C    H4' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HA  
CONECT      C2'    4 C3'  C1'  H2'1 H2'2
CONECT      C1'    4 C2'  N1   C    H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H3  
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5M  C6  
CONECT      C5M    4 C5   H5M1 H5M2 H5M3
CONECT      C      4 C4'  C1'  O    H   
CONECT      C6     3 N1   C5   H6  
CONECT      O      2 C    HB  
CONECT      H3P    1 O3P 
CONECT      H2P    1 O2P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HA     1 O3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H3     1 N3  
CONECT      H5M1   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M3   1 C5M 
CONECT      H      1 C   
CONECT      H6     1 C6  
CONECT      HB     1 O   
END   
HET    T48             39
HETNAM     T48 6'-ALPHA-HYDROXY CARBOCYCLIC THYMIDINE 5'-MONOPHOSPHATE
FORMUL      T48    C11 H17 N2 O8 P1

This OCA

MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)