Structure based on 1tl8

Ideal structure
Name: 5'-thio-2'-deoxy-cytosine phosphonic acid
Formula: C9 H14 N3 O6 P S
Weight: 323.263
SMILES: "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CS[P](O)(O)=O)O2"
Spacial conformation based on PDB 1tl8
RESIDUE   TPC     34
CONECT      S5'    2 C5'  P   
CONECT      N1     3 C6   C2   C1' 
CONECT      C6     3 N1   C5   H6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   HN41 HN42
CONECT      C5     3 C6   C4   H5  
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C5'    4 S5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C3'    4 C2'  C4'  O3'  H1  
CONECT      O3'    2 C3'  H3' 
CONECT      P      4 S5'  OP1  OP2  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HO2P
CONECT      OP3    2 P    HO3P
CONECT      H6     1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      H5     1 C5  
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H1     1 C3' 
CONECT      H3'    1 O3' 
CONECT      HO2P   1 OP2 
CONECT      HO3P   1 OP3 
END   
HET    TPC             34
HETNAM     TPC 5'-THIO-2'-DEOXY-CYTOSINE PHOSPHONIC ACID
FORMUL      TPC    C9 H14 N3 O6 P1 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science