Structure based on 1t9a

Ideal structure
Name: 2-{[(4-amino-2-methylpyrimidin-5-yl)methyl]amino}propane-1-thiol
Formula: C9 H16 N4 S
Weight: 212.315
SMILES: "C[CH](CS)NCc1cnc(C)nc1N"
Spacial conformation based on PDB 1t9a.
Also present on 1t9b
RESIDUE   YF3     30
CONECT      N1'    2 C2'  C6' 
CONECT      C2'    3 N1'  CM2  N3' 
CONECT      CM2    4 C2'  HM21 HM22 HM23
CONECT      N3'    2 C2'  C4' 
CONECT      C4'    3 N3'  N4'  C5' 
CONECT      N4'    3 C4'  H4'1 H4'2
CONECT      C5'    3 C4'  C6'  C7' 
CONECT      C6'    3 N1'  C5'  H6' 
CONECT      C7'    4 C5'  N3   H7'1 H7'2
CONECT      N3     3 C7'  C4   HN3 
CONECT      C4     4 N3   CM4  C2   H4  
CONECT      CM4    4 C4   HM41 HM42 HM43
CONECT      S1     2 C2   HS1 
CONECT      C2     4 C4   S1   H21  H22 
CONECT      HM21   1 CM2 
CONECT      HM22   1 CM2 
CONECT      HM23   1 CM2 
CONECT      H4'1   1 N4' 
CONECT      H4'2   1 N4' 
CONECT      H6'    1 C6' 
CONECT      H7'1   1 C7' 
CONECT      H7'2   1 C7' 
CONECT      HN3    1 N3  
CONECT      H4     1 C4  
CONECT      HM41   1 CM4 
CONECT      HM42   1 CM4 
CONECT      HM43   1 CM4 
CONECT      HS1    1 S1  
CONECT      H21    1 C2  
CONECT      H22    1 C2  
END   
HET    YF3             30
HETNAM     YF3 2-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}PROPAN
HETNAM   2 YF3 E-1-THIOL
FORMUL      YF3    C9 H16 N4 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science