PDB Short entry for 1DKU HEADER TRANSFERASE 08-DEC-99 1DKU TITLE CRYSTAL STRUCTURES OF BACILLUS SUBTILIS PHOSPHORIBOSYLPYROPHOSPHATE TITLE 2 SYNTHETASE: MOLECULAR BASIS OF ALLOSTERIC INHIBITION AND ACTIVATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE; COMPND 5 EC: 2.7.6.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HO773, IV; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAB600 KEYWDS OPEN ALPHA-BETA STRUCTURE, DOMAIN DUPLICATION, KEYWDS 2 PHOSPHORIBOSYLTRANSFERASE TYPE I FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.A.ERIKSEN,A.KADZIOLA,A.-K.BENTSEN,K.W.HARLOW,S.LARSEN REVDAT 4 04-OCT-17 1DKU 1 REMARK REVDAT 3 24-FEB-09 1DKU 1 VERSN REVDAT 2 01-APR-03 1DKU 1 JRNL REVDAT 1 05-APR-00 1DKU 0 JRNL AUTH T.A.ERIKSEN,A.KADZIOLA,A.K.BENTSEN,K.W.HARLOW,S.LARSEN JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION OF BACILLUS SUBTILIS JRNL TITL 2 PHOSPHORIBOSYL-PYROPHOSPHATE SYNTHETASE. JRNL REF NAT.STRUCT.BIOL. V. 7 303 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10742175 JRNL DOI 10.1038/74069 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.-K.BENTSEN,T.A.LARSEN,A.KADZIOLA,S.LARSEN,K.W.HARLOW REMARK 1 TITL OVEREXPRESSION OF THE B. SUBTILIS REMARK 1 TITL 2 PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE AND CRYSTALLIZATION REMARK 1 TITL 3 OF THE FREE ENZYME AND ITS SUBSTRATE-EFFECTOR COMPLEXES REMARK 1 REF PROTEINS V. 24 238 1996 REMARK 1 REFN ISSN 0887-3585 REMARK 1 DOI 10.1002/(SICI)1097-0134(199602)24:2<238::AID-PROT10>3.0.CO;2 REMARK 1 DOI 2 -O REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : SELECTED IN CONSISTENCE WITH REMARK 3 THE R-FREE DATA FOR STRUCTURE REMARK 3 ID CODE 1DKR REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4093 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 285.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SOFTWARE AT SYNCHROTRON REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA, REMARK 200 TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.03700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, ALPHA,BETA REMARK 280 -METHYLENE ADP, MAGNESIUM CHLORIDE, BETA- OCTYLGLUCOSIDE , PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.20500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.20500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.82500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 100.15584 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.82500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 100.15584 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.82500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 100.15584 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 199 REMARK 465 PRO A 200 REMARK 465 ARG A 201 REMARK 465 PRO A 202 REMARK 465 ASN A 203 REMARK 465 VAL A 204 REMARK 465 ALA A 205 REMARK 465 GLU A 206 REMARK 465 VAL A 207 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 LYS A 284 REMARK 465 SER A 316 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 ASN B 2 REMARK 465 GLN B 3 REMARK 465 TYR B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 199 REMARK 465 PRO B 200 REMARK 465 ARG B 201 REMARK 465 PRO B 202 REMARK 465 ASN B 203 REMARK 465 VAL B 204 REMARK 465 ALA B 205 REMARK 465 GLU B 206 REMARK 465 VAL B 207 REMARK 465 PRO B 281 REMARK 465 GLU B 282 REMARK 465 GLU B 283 REMARK 465 LYS B 284 REMARK 465 SER B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 262 CG GLU B 262 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 -155.14 -98.91 REMARK 500 SER A 86 30.67 73.36 REMARK 500 ILE A 112 76.65 -112.26 REMARK 500 LYS A 189 53.33 37.00 REMARK 500 ASP A 227 -86.14 -102.03 REMARK 500 LEU A 256 65.92 39.04 REMARK 500 ARG A 288 78.74 -109.36 REMARK 500 LEU B 14 -156.36 -98.29 REMARK 500 CYS B 35 138.57 -177.89 REMARK 500 THR B 38 -162.51 -104.32 REMARK 500 ILE B 112 78.79 -113.30 REMARK 500 ASP B 227 -85.91 -103.02 REMARK 500 LEU B 256 65.17 37.80 REMARK 500 ARG B 288 78.51 -108.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 59 0.08 SIDE CHAIN REMARK 500 TYR A 97 0.07 SIDE CHAIN REMARK 500 TYR B 59 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP2 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP2 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABM A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABM B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKR RELATED DB: PDB REMARK 900 COMPLEX WITH SULFATE IONS BOUND IN THE ACTIVE AND ALLOSTERIC SITE DBREF 1DKU A 0 316 UNP P14193 KPRS_BACSU 1 317 DBREF 1DKU B 0 316 UNP P14193 KPRS_BACSU 1 317 SEQRES 1 A 317 MET SER ASN GLN TYR GLY ASP LYS ASN LEU LYS ILE PHE SEQRES 2 A 317 SER LEU ASN SER ASN PRO GLU LEU ALA LYS GLU ILE ALA SEQRES 3 A 317 ASP ILE VAL GLY VAL GLN LEU GLY LYS CYS SER VAL THR SEQRES 4 A 317 ARG PHE SER ASP GLY GLU VAL GLN ILE ASN ILE GLU GLU SEQRES 5 A 317 SER ILE ARG GLY CYS ASP CYS TYR ILE ILE GLN SER THR SEQRES 6 A 317 SER ASP PRO VAL ASN GLU HIS ILE MET GLU LEU LEU ILE SEQRES 7 A 317 MET VAL ASP ALA LEU LYS ARG ALA SER ALA LYS THR ILE SEQRES 8 A 317 ASN ILE VAL ILE PRO TYR TYR GLY TYR ALA ARG GLN ASP SEQRES 9 A 317 ARG LYS ALA ARG SER ARG GLU PRO ILE THR ALA LYS LEU SEQRES 10 A 317 PHE ALA ASN LEU LEU GLU THR ALA GLY ALA THR ARG VAL SEQRES 11 A 317 ILE ALA LEU ASP LEU HIS ALA PRO GLN ILE GLN GLY PHE SEQRES 12 A 317 PHE ASP ILE PRO ILE ASP HIS LEU MET GLY VAL PRO ILE SEQRES 13 A 317 LEU GLY GLU TYR PHE GLU GLY LYS ASN LEU GLU ASP ILE SEQRES 14 A 317 VAL ILE VAL SER PRO ASP HIS GLY GLY VAL THR ARG ALA SEQRES 15 A 317 ARG LYS LEU ALA ASP ARG LEU LYS ALA PRO ILE ALA ILE SEQRES 16 A 317 ILE ASP LYS ARG ARG PRO ARG PRO ASN VAL ALA GLU VAL SEQRES 17 A 317 MET ASN ILE VAL GLY ASN ILE GLU GLY LYS THR ALA ILE SEQRES 18 A 317 LEU ILE ASP ASP ILE ILE ASP THR ALA GLY THR ILE THR SEQRES 19 A 317 LEU ALA ALA ASN ALA LEU VAL GLU ASN GLY ALA LYS GLU SEQRES 20 A 317 VAL TYR ALA CYS CYS THR HIS PRO VAL LEU SER GLY PRO SEQRES 21 A 317 ALA VAL GLU ARG ILE ASN ASN SER THR ILE LYS GLU LEU SEQRES 22 A 317 VAL VAL THR ASN SER ILE LYS LEU PRO GLU GLU LYS LYS SEQRES 23 A 317 ILE GLU ARG PHE LYS GLN LEU SER VAL GLY PRO LEU LEU SEQRES 24 A 317 ALA GLU ALA ILE ILE ARG VAL HIS GLU GLN GLN SER VAL SEQRES 25 A 317 SER TYR LEU PHE SER SEQRES 1 B 317 MET SER ASN GLN TYR GLY ASP LYS ASN LEU LYS ILE PHE SEQRES 2 B 317 SER LEU ASN SER ASN PRO GLU LEU ALA LYS GLU ILE ALA SEQRES 3 B 317 ASP ILE VAL GLY VAL GLN LEU GLY LYS CYS SER VAL THR SEQRES 4 B 317 ARG PHE SER ASP GLY GLU VAL GLN ILE ASN ILE GLU GLU SEQRES 5 B 317 SER ILE ARG GLY CYS ASP CYS TYR ILE ILE GLN SER THR SEQRES 6 B 317 SER ASP PRO VAL ASN GLU HIS ILE MET GLU LEU LEU ILE SEQRES 7 B 317 MET VAL ASP ALA LEU LYS ARG ALA SER ALA LYS THR ILE SEQRES 8 B 317 ASN ILE VAL ILE PRO TYR TYR GLY TYR ALA ARG GLN ASP SEQRES 9 B 317 ARG LYS ALA ARG SER ARG GLU PRO ILE THR ALA LYS LEU SEQRES 10 B 317 PHE ALA ASN LEU LEU GLU THR ALA GLY ALA THR ARG VAL SEQRES 11 B 317 ILE ALA LEU ASP LEU HIS ALA PRO GLN ILE GLN GLY PHE SEQRES 12 B 317 PHE ASP ILE PRO ILE ASP HIS LEU MET GLY VAL PRO ILE SEQRES 13 B 317 LEU GLY GLU TYR PHE GLU GLY LYS ASN LEU GLU ASP ILE SEQRES 14 B 317 VAL ILE VAL SER PRO ASP HIS GLY GLY VAL THR ARG ALA SEQRES 15 B 317 ARG LYS LEU ALA ASP ARG LEU LYS ALA PRO ILE ALA ILE SEQRES 16 B 317 ILE ASP LYS ARG ARG PRO ARG PRO ASN VAL ALA GLU VAL SEQRES 17 B 317 MET ASN ILE VAL GLY ASN ILE GLU GLY LYS THR ALA ILE SEQRES 18 B 317 LEU ILE ASP ASP ILE ILE ASP THR ALA GLY THR ILE THR SEQRES 19 B 317 LEU ALA ALA ASN ALA LEU VAL GLU ASN GLY ALA LYS GLU SEQRES 20 B 317 VAL TYR ALA CYS CYS THR HIS PRO VAL LEU SER GLY PRO SEQRES 21 B 317 ALA VAL GLU ARG ILE ASN ASN SER THR ILE LYS GLU LEU SEQRES 22 B 317 VAL VAL THR ASN SER ILE LYS LEU PRO GLU GLU LYS LYS SEQRES 23 B 317 ILE GLU ARG PHE LYS GLN LEU SER VAL GLY PRO LEU LEU SEQRES 24 B 317 ALA GLU ALA ILE ILE ARG VAL HIS GLU GLN GLN SER VAL SEQRES 25 B 317 SER TYR LEU PHE SER HET AP2 A1002 27 HET ABM A1003 23 HET AP2 B1001 27 HET ABM B1004 23 HETNAM AP2 PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM ABM METHYL PHOSPHONIC ACID ADENOSINE ESTER HETSYN ABM ALPHA-METHYLENE ADENOSINE MONOPHOSPHATE FORMUL 3 AP2 2(C11 H17 N5 O9 P2) FORMUL 4 ABM 2(C11 H16 N5 O6 P) FORMUL 7 HOH *180(H2 O) HELIX 1 1 ASN A 17 GLY A 29 1 13 HELIX 2 2 PRO A 67 ALA A 85 1 19 HELIX 3 3 ILE A 112 GLY A 125 1 14 HELIX 4 4 ALA A 136 PHE A 143 5 8 HELIX 5 5 GLY A 152 GLY A 162 1 11 HELIX 6 6 ASP A 174 GLY A 176 5 3 HELIX 7 7 GLY A 177 LEU A 188 1 12 HELIX 8 8 ALA A 229 ASN A 242 1 14 HELIX 9 9 PRO A 259 ASN A 266 1 8 HELIX 10 10 VAL A 294 GLN A 308 1 15 HELIX 11 11 VAL A 311 PHE A 315 5 5 HELIX 12 12 ASN B 17 GLY B 29 1 13 HELIX 13 13 PRO B 67 ALA B 85 1 19 HELIX 14 14 ILE B 112 GLY B 125 1 14 HELIX 15 15 ALA B 136 PHE B 143 5 8 HELIX 16 16 GLY B 152 GLY B 162 1 11 HELIX 17 17 ASP B 174 GLY B 176 5 3 HELIX 18 18 GLY B 177 LYS B 189 1 13 HELIX 19 19 ALA B 229 ASN B 242 1 14 HELIX 20 20 PRO B 259 ASN B 266 1 8 HELIX 21 21 VAL B 294 GLU B 307 1 14 HELIX 22 22 VAL B 311 PHE B 315 5 5 SHEET 1 A 5 LEU A 9 SER A 13 0 SHEET 2 A 5 ASP A 57 ILE A 61 1 O ASP A 57 N LYS A 10 SHEET 3 A 5 THR A 89 ILE A 94 1 O THR A 89 N CYS A 58 SHEET 4 A 5 ARG A 128 LEU A 132 1 O ARG A 128 N ILE A 92 SHEET 5 A 5 ILE A 147 LEU A 150 1 O ASP A 148 N ALA A 131 SHEET 1 B 2 CYS A 35 ARG A 39 0 SHEET 2 B 2 VAL A 45 ILE A 49 -1 N GLN A 46 O THR A 38 SHEET 1 C 7 ASN A 209 VAL A 211 0 SHEET 2 C 7 ILE A 192 ASP A 196 -1 O ILE A 194 N VAL A 211 SHEET 3 C 7 ILE A 168 SER A 172 1 O ILE A 170 N ALA A 193 SHEET 4 C 7 THR A 218 ILE A 222 1 O THR A 218 N VAL A 169 SHEET 5 C 7 GLU A 246 CYS A 250 1 O GLU A 246 N ALA A 219 SHEET 6 C 7 ILE A 269 THR A 275 1 N LYS A 270 O VAL A 247 SHEET 7 C 7 PHE A 289 LEU A 292 1 O LYS A 290 N VAL A 274 SHEET 1 D 2 ILE A 225 ILE A 226 0 SHEET 2 D 2 HIS A 253 PRO A 254 1 O HIS A 253 N ILE A 226 SHEET 1 E 5 LEU B 9 SER B 13 0 SHEET 2 E 5 ASP B 57 ILE B 61 1 O ASP B 57 N LYS B 10 SHEET 3 E 5 THR B 89 ILE B 94 1 O THR B 89 N CYS B 58 SHEET 4 E 5 ARG B 128 LEU B 132 1 O ARG B 128 N ILE B 92 SHEET 5 E 5 ILE B 147 LEU B 150 1 O ASP B 148 N ALA B 131 SHEET 1 F 2 CYS B 35 ARG B 39 0 SHEET 2 F 2 VAL B 45 ILE B 49 -1 N GLN B 46 O THR B 38 SHEET 1 G 7 ASN B 209 VAL B 211 0 SHEET 2 G 7 ILE B 192 ASP B 196 -1 O ILE B 194 N VAL B 211 SHEET 3 G 7 ILE B 168 SER B 172 1 O ILE B 170 N ALA B 193 SHEET 4 G 7 THR B 218 ILE B 222 1 O THR B 218 N VAL B 169 SHEET 5 G 7 GLU B 246 CYS B 250 1 O GLU B 246 N ALA B 219 SHEET 6 G 7 ILE B 269 THR B 275 1 N LYS B 270 O VAL B 247 SHEET 7 G 7 PHE B 289 LEU B 292 1 O LYS B 290 N VAL B 274 SHEET 1 H 2 ILE B 225 ILE B 226 0 SHEET 2 H 2 HIS B 253 PRO B 254 1 O HIS B 253 N ILE B 226 CISPEP 1 ASP A 66 PRO A 67 0 0.41 CISPEP 2 ASP B 66 PRO B 67 0 -1.99 SITE 1 AC1 15 LYS A 105 SER A 108 ARG A 109 SER B 52 SITE 2 AC1 15 ARG B 54 GLN B 140 ASP B 148 HIS B 149 SITE 3 AC1 15 SER B 310 VAL B 311 SER B 312 PHE B 315 SITE 4 AC1 15 HOH B1005 HOH B1006 HOH B1029 SITE 1 AC2 16 SER A 52 ARG A 54 GLN A 140 ASP A 148 SITE 2 AC2 16 HIS A 149 SER A 310 VAL A 311 SER A 312 SITE 3 AC2 16 PHE A 315 HOH A1010 LYS B 105 ALA B 106 SITE 4 AC2 16 ARG B 107 SER B 108 ARG B 109 HOH B1045 SITE 1 AC3 11 ARG A 101 GLN A 102 ALA A 106 HIS A 135 SITE 2 AC3 11 HOH A1046 HOH A1096 HOH A1097 HOH A1098 SITE 3 AC3 11 PHE B 40 ASP B 42 GLU B 44 SITE 1 AC4 10 PHE A 40 ASP A 42 GLU A 44 ARG B 101 SITE 2 AC4 10 GLN B 102 ARG B 104 ALA B 106 GLU B 110 SITE 3 AC4 10 HIS B 135 HOH B1088 CRYST1 115.650 115.650 106.410 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008650 0.004990 0.000000 0.00000 SCALE2 0.000000 0.009980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009400 0.00000