PDB Short entry for 1F0L HEADER TOXIN 16-MAY-00 1F0L TITLE 1.55 ANGSTROM CRYSTAL STRUCTURE OF WILD TYPE DIPHTHERIA TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHERIA TOXIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717 KEYWDS BACTERIAL TOXIN, ADP-RIBOSYLATION, TRANSMEMBRANE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR B.STEERE,D.EISENBERG REVDAT 5 09-AUG-23 1F0L 1 REMARK REVDAT 4 24-FEB-09 1F0L 1 VERSN REVDAT 3 22-MAY-02 1F0L 1 AUTHOR JRNL REMARK REVDAT 2 06-DEC-00 1F0L 1 REMARK REVDAT 1 16-NOV-00 1F0L 0 JRNL AUTH B.STEERE JRNL TITL CHARACTERIZATION OF HIGH-ORDER OLIGOMERIZATION AND JRNL TITL 2 ENERGETICS IN DIPHTHERIA TOXIN JRNL REF THESIS 2001 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NCS-RELATED (G.PFLUEGL) REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.188 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.188 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 7212 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 149412 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.181 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.181 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 6498 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 135516 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 1809 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 9442.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 7782.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 78 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 41198 REMARK 3 NUMBER OF RESTRAINTS : 35383 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 0.023 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.026 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.044 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.045 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.039 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.031 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS AND KRETSINGER, J.MOL.BIOL. 91(1973) 201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 USED CONJUGATE GRADIENT LEAST SQUARES PROCEDURE REMARK 3 MODEL REFINED USING I'S, NOT F'S REMARK 3 RIDING HYDROGENS PLACED ON PROTEIN ATOMS WITH HFIX REMARK 4 REMARK 4 1F0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 149412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXL REMARK 200 STARTING MODEL: 1MDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITERS OF PROTEIN SOLUTION REMARK 280 CONSISTING OF: 8 MG/ML WILD TYPE DIPHTHERIA TOXIN MONOMER + APUP, REMARK 280 0.5 MILLIMOLAR EDTA, 50 MILLIMOLAR TRIS-HCL, PH 7.5 PLUS 2 REMARK 280 MICROLITERS OF RESERVIOR SOLUTION CONSISTING OF: 17% PEG 8000, 1 REMARK 280 MOLAR SODIUM CHLORIDE, 50 MILLIMOLAR TRIS-HCL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 83.88500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.88500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO MOLECULES IN THE ASYMMETRIC UNIT, INDICATED REMARK 300 BY CHAIN IDENTIFIERS A AND B. THE NON-CRYSTALLOGRAPHIC REMARK 300 TWO-FOLD AXIS RELATING A TO B IS SPECIFIED IN THE MTRIX REMARK 300 RECORDS BELOW. THIS TRANSFORMATION WILL YIELD APPROXIMATE REMARK 300 COORDINATES FOR CHAIN B WHEN APPLIED TO CHAIN A. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 188 REMARK 465 ASN A 189 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 ARG A 192 REMARK 465 ARG A 193 REMARK 465 SER A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 465 VAL A 351 REMARK 465 ASP A 352 REMARK 465 GLY B 188 REMARK 465 ASN B 189 REMARK 465 ARG B 190 REMARK 465 VAL B 191 REMARK 465 ARG B 192 REMARK 465 ARG B 193 REMARK 465 SER B 194 REMARK 465 VAL B 195 REMARK 465 GLY B 196 REMARK 465 SER B 197 REMARK 465 SER B 198 REMARK 465 LEU B 199 REMARK 465 SER B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CD CE NZ REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LEU A 350 CG CD1 CD2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 ARG A 460 CD NE CZ NH1 NH2 REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 LYS A 498 CG CD CE NZ REMARK 470 ILE A 499 CG1 CG2 CD1 REMARK 470 ASN A 502 CG OD1 ND2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 498 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 998 O HOH A 1476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 458 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR B 54 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR B 54 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 HIS B 257 CB - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 377 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 455 NH1 - CZ - NH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 455 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 455 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 458 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 460 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 460 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 493 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 115.30 -35.92 REMARK 500 GLU A 349 36.93 -164.42 REMARK 500 TYR A 358 -88.92 -110.98 REMARK 500 SER A 381 86.38 -12.62 REMARK 500 ASN A 424 -93.37 -154.38 REMARK 500 PRO A 438 100.98 -34.96 REMARK 500 PRO A 438 -24.65 -36.98 REMARK 500 GLU A 497 122.09 -39.81 REMARK 500 VAL B 5 -7.50 -140.37 REMARK 500 ASP B 68 119.50 -38.31 REMARK 500 TYR B 358 -91.82 -111.47 REMARK 500 SER B 381 87.78 -8.72 REMARK 500 ASN B 424 -89.58 -153.76 REMARK 500 PRO B 438 -14.85 -38.76 REMARK 500 LYS B 440 -47.18 -149.24 REMARK 500 SER B 501 -31.64 -37.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 SHEET R1 IS NOT A CLOSED BARREL, BUT IT IS CLOSED ON ONE REMARK 700 SIDE AND FLATTENED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: REFERS TO CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: CBT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: REFERS TO CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APU B 602 DBREF 1F0L A 1 535 UNP P00588 DTX_CORBE 26 560 DBREF 1F0L B 1 535 UNP P00588 DTX_CORBE 26 560 SEQRES 1 A 535 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 A 535 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 A 535 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 A 535 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLY SEQRES 5 A 535 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 A 535 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 A 535 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 A 535 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 A 535 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 A 535 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 A 535 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 A 535 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 A 535 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 A 535 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 A 535 ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER VAL SEQRES 16 A 535 GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP VAL SEQRES 17 A 535 ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU LYS SEQRES 18 A 535 GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER PRO SEQRES 19 A 535 ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR LEU SEQRES 20 A 535 GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU LEU SEQRES 21 A 535 SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL PHE SEQRES 22 A 535 ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL ALA SEQRES 23 A 535 GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU LYS SEQRES 24 A 535 THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SER SEQRES 25 A 535 VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN THR SEQRES 26 A 535 GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER LEU SEQRES 27 A 535 MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU VAL SEQRES 28 A 535 ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER ILE SEQRES 29 A 535 ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN ARG SEQRES 30 A 535 PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE LEU SEQRES 31 A 535 HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU ASP SEQRES 32 A 535 SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY HIS SEQRES 33 A 535 ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO ILE SEQRES 34 A 535 ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU ASP SEQRES 35 A 535 VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY ARG SEQRES 36 A 535 LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP VAL SEQRES 37 A 535 THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY ASN SEQRES 38 A 535 GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SER SEQRES 39 A 535 SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER ASP SEQRES 40 A 535 SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP HIS SEQRES 41 A 535 THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU ILE SEQRES 42 A 535 LYS SER SEQRES 1 B 535 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 B 535 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 B 535 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 B 535 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLY SEQRES 5 B 535 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 B 535 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 B 535 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 B 535 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 B 535 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 B 535 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 B 535 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 B 535 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 B 535 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 B 535 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 B 535 ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER VAL SEQRES 16 B 535 GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP VAL SEQRES 17 B 535 ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU LYS SEQRES 18 B 535 GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER PRO SEQRES 19 B 535 ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR LEU SEQRES 20 B 535 GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU LEU SEQRES 21 B 535 SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL PHE SEQRES 22 B 535 ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL ALA SEQRES 23 B 535 GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU LYS SEQRES 24 B 535 THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SER SEQRES 25 B 535 VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN THR SEQRES 26 B 535 GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER LEU SEQRES 27 B 535 MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU VAL SEQRES 28 B 535 ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER ILE SEQRES 29 B 535 ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN ARG SEQRES 30 B 535 PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE LEU SEQRES 31 B 535 HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU ASP SEQRES 32 B 535 SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY HIS SEQRES 33 B 535 ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO ILE SEQRES 34 B 535 ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU ASP SEQRES 35 B 535 VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY ARG SEQRES 36 B 535 LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP VAL SEQRES 37 B 535 THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY ASN SEQRES 38 B 535 GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SER SEQRES 39 B 535 SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER ASP SEQRES 40 B 535 SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP HIS SEQRES 41 B 535 THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU ILE SEQRES 42 B 535 LYS SER HET CL A 701 1 HET CL A 702 1 HET CL A 703 1 HET CL A 704 1 HET APU A 601 43 HET CL B 705 1 HET CL B 706 1 HET CL B 707 1 HET CL B 708 1 HET CL B 709 1 HET APU B 602 43 HETNAM CL CHLORIDE ION HETNAM APU ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE FORMUL 3 CL 9(CL 1-) FORMUL 7 APU 2(C19 H25 N7 O15 P2) FORMUL 14 HOH *1809(H2 O) HELIX 1 1 GLY A 1 VAL A 6 1 6 HELIX 2 2 ASP A 7 SER A 11 5 5 HELIX 3 3 ASP A 29 GLY A 34 5 6 HELIX 4 4 ASP A 47 LYS A 51 5 5 HELIX 5 5 ASN A 58 GLY A 64 1 7 HELIX 6 6 ASN A 98 LEU A 106 1 9 HELIX 7 7 PRO A 113 GLY A 119 1 7 HELIX 8 8 THR A 120 GLY A 128 1 9 HELIX 9 9 GLU A 154 LEU A 159 5 6 HELIX 10 10 GLU A 168 GLY A 171 5 4 HELIX 11 11 GLN A 175 GLN A 184 1 10 HELIX 12 12 ASP A 205 GLU A 222 1 18 HELIX 13 13 HIS A 223 GLU A 232 1 10 HELIX 14 14 SER A 239 LEU A 255 1 17 HELIX 15 15 GLU A 256 GLU A 259 5 4 HELIX 16 16 LEU A 260 GLY A 268 1 9 HELIX 17 17 THR A 269 PHE A 273 5 5 HELIX 18 18 ALA A 274 ILE A 289 1 16 HELIX 19 19 ASP A 290 ASP A 295 1 6 HELIX 20 20 ASN A 296 SER A 305 1 10 HELIX 21 21 GLY A 309 GLY A 315 1 7 HELIX 22 22 THR A 325 GLY A 348 1 24 HELIX 23 23 TYR A 358 ASN A 376 1 19 HELIX 24 24 THR A 400 ASP A 403 5 4 HELIX 25 25 GLY B 1 VAL B 5 5 5 HELIX 26 26 ASP B 7 SER B 11 5 5 HELIX 27 27 TYR B 27 GLN B 32 1 6 HELIX 28 28 ASP B 47 LYS B 51 5 5 HELIX 29 29 ASN B 58 GLY B 64 1 7 HELIX 30 30 ASN B 98 LEU B 106 1 9 HELIX 31 31 PRO B 113 GLY B 119 1 7 HELIX 32 32 THR B 120 GLY B 128 1 9 HELIX 33 33 GLU B 154 LEU B 159 5 6 HELIX 34 34 GLU B 168 GLY B 171 5 4 HELIX 35 35 GLN B 175 ALA B 185 1 11 HELIX 36 36 ASP B 205 HIS B 223 1 19 HELIX 37 37 HIS B 223 SER B 233 1 11 HELIX 38 38 SER B 239 LEU B 255 1 17 HELIX 39 39 GLU B 256 GLU B 259 5 4 HELIX 40 40 LEU B 260 GLY B 268 1 9 HELIX 41 41 THR B 269 PHE B 273 5 5 HELIX 42 42 ALA B 274 ILE B 289 1 16 HELIX 43 43 ASP B 290 ASP B 295 1 6 HELIX 44 44 ASN B 296 SER B 305 1 10 HELIX 45 45 GLY B 309 GLY B 315 1 7 HELIX 46 46 THR B 325 ILE B 344 1 20 HELIX 47 47 ASP B 352 ALA B 357 5 6 HELIX 48 48 TYR B 358 ASN B 376 1 19 HELIX 49 49 THR B 400 ASP B 403 5 4 SHEET 1 A 5 PHE A 12 GLU A 15 0 SHEET 2 A 5 LEU A 88 ALA A 93 -1 O THR A 89 N MET A 14 SHEET 3 A 5 ARG A 133 PRO A 139 1 O ARG A 133 N LYS A 90 SHEET 4 A 5 VAL A 147 ASN A 151 -1 N GLU A 148 O LEU A 138 SHEET 5 A 5 PHE A 53 THR A 56 -1 O PHE A 53 N ASN A 151 SHEET 1 B 3 SER A 18 THR A 23 0 SHEET 2 B 3 GLY A 79 THR A 84 -1 O GLY A 79 N THR A 23 SHEET 3 B 3 SER A 160 ASN A 166 -1 N SER A 160 O THR A 84 SHEET 1 C 2 ILE A 316 ALA A 317 0 SHEET 2 C 2 ALA A 320 VAL A 321 -1 N ALA A 320 O ALA A 317 SHEET 1 D 5 PHE A 389 HIS A 391 0 SHEET 2 D 5 TYR A 394 TRP A 398 -1 N TYR A 394 O HIS A 391 SHEET 3 D 5 GLU A 413 ALA A 422 -1 N LYS A 419 O SER A 397 SHEET 4 D 5 ALA A 485 ARG A 493 -1 O ALA A 485 N ILE A 420 SHEET 5 D 5 LEU A 441 VAL A 443 -1 O ASP A 442 N HIS A 492 SHEET 1 E 6 PHE A 389 HIS A 391 0 SHEET 2 E 6 TYR A 394 TRP A 398 -1 N TYR A 394 O HIS A 391 SHEET 3 E 6 GLU A 413 ALA A 422 -1 N LYS A 419 O SER A 397 SHEET 4 E 6 ALA A 485 ARG A 493 -1 O ALA A 485 N ILE A 420 SHEET 5 E 6 HIS A 449 VAL A 452 -1 O HIS A 449 N HIS A 488 SHEET 6 E 6 ARG A 455 ILE A 457 -1 O ARG A 455 N VAL A 452 SHEET 1 F 2 ILE A 405 ARG A 407 0 SHEET 2 F 2 GLU A 532 LYS A 534 1 O GLU A 532 N ILE A 406 SHEET 1 G 2 LEU A 427 ILE A 429 0 SHEET 2 G 2 VAL A 477 VAL A 479 -1 O VAL A 477 N ILE A 429 SHEET 1 H 5 MET A 459 ILE A 464 0 SHEET 2 H 5 VAL A 468 PRO A 473 -1 O VAL A 468 N ILE A 464 SHEET 3 H 5 GLY A 431 PRO A 435 -1 O VAL A 432 N CYS A 471 SHEET 4 H 5 SER A 508 VAL A 518 -1 N GLY A 510 O LEU A 433 SHEET 5 H 5 THR A 521 PHE A 530 -1 O THR A 521 N VAL A 518 SHEET 1 I 5 PHE B 12 GLU B 15 0 SHEET 2 I 5 LEU B 88 ALA B 93 -1 O THR B 89 N MET B 14 SHEET 3 I 5 ARG B 133 PRO B 139 1 O ARG B 133 N LYS B 90 SHEET 4 I 5 VAL B 147 ASN B 151 -1 N GLU B 148 O LEU B 138 SHEET 5 I 5 PHE B 53 THR B 56 -1 O PHE B 53 N ASN B 151 SHEET 1 J 3 SER B 18 THR B 23 0 SHEET 2 J 3 GLY B 79 THR B 84 -1 O GLY B 79 N THR B 23 SHEET 3 J 3 SER B 160 ASN B 166 -1 N SER B 160 O THR B 84 SHEET 1 K 2 ILE B 316 ALA B 317 0 SHEET 2 K 2 ALA B 320 VAL B 321 -1 O ALA B 320 N ALA B 317 SHEET 1 L 5 PHE B 389 HIS B 391 0 SHEET 2 L 5 TYR B 394 TRP B 398 -1 N TYR B 394 O HIS B 391 SHEET 3 L 5 GLU B 413 ALA B 422 -1 N LYS B 419 O SER B 397 SHEET 4 L 5 ALA B 485 ARG B 493 -1 N ALA B 485 O ILE B 420 SHEET 5 L 5 LEU B 441 VAL B 443 -1 O ASP B 442 N HIS B 492 SHEET 1 M10 PHE B 389 HIS B 391 0 SHEET 2 M10 TYR B 394 TRP B 398 -1 N TYR B 394 O HIS B 391 SHEET 3 M10 GLU B 413 ALA B 422 -1 N LYS B 419 O SER B 397 SHEET 4 M10 ALA B 485 ARG B 493 -1 N ALA B 485 O ILE B 420 SHEET 5 M10 HIS B 449 VAL B 452 -1 O HIS B 449 N HIS B 488 SHEET 6 M10 ARG B 455 ILE B 464 -1 O ARG B 455 N VAL B 452 SHEET 7 M10 VAL B 468 PRO B 473 -1 O VAL B 468 N ILE B 464 SHEET 8 M10 GLY B 431 PRO B 435 -1 O VAL B 432 N CYS B 471 SHEET 9 M10 SER B 508 VAL B 518 -1 O GLY B 510 N LEU B 433 SHEET 10 M10 THR B 521 PHE B 530 -1 O THR B 521 N VAL B 518 SHEET 1 N 2 ILE B 405 ARG B 407 0 SHEET 2 N 2 GLU B 532 LYS B 534 1 O GLU B 532 N ILE B 406 SHEET 1 O 2 LEU B 427 ILE B 429 0 SHEET 2 O 2 VAL B 477 VAL B 479 -1 O VAL B 477 N ILE B 429 SSBOND 1 CYS A 186 CYS A 201 1555 1555 2.03 SSBOND 2 CYS A 461 CYS A 471 1555 1555 2.07 SSBOND 3 CYS B 186 CYS B 201 1555 1555 2.03 SSBOND 4 CYS B 461 CYS B 471 1555 1555 2.05 SITE 1 CAT 5 HIS A 21 TYR A 65 GLU A 148 SER A 446 SITE 2 CAT 5 ARG A 458 SITE 1 CBT 5 HIS B 21 TYR B 65 GLU B 148 SER B 446 SITE 2 CBT 5 ARG B 458 SITE 1 AC1 5 GLU A 142 HIS A 449 SER A 451 ASN A 486 SITE 2 AC1 5 HOH A1066 SITE 1 AC2 4 HIS A 391 LYS A 516 LYS A 526 HOH A1039 SITE 1 AC3 3 ASN A 166 ARG A 170 HOH A1342 SITE 1 AC4 3 LYS A 24 LYS A 474 HOH A1476 SITE 1 AC5 5 GLU B 142 HIS B 449 SER B 451 ASN B 486 SITE 2 AC5 5 HOH B1935 SITE 1 AC6 5 HIS B 391 LYS B 516 LYS B 526 HOH B1908 SITE 2 AC6 5 HOH B2098 SITE 1 AC7 3 PRO B 225 ASN B 228 HOH B2412 SITE 1 AC8 2 ASN B 166 HOH B1911 SITE 1 AC9 5 LYS B 24 LYS B 474 APU B 602 HOH B1995 SITE 2 AC9 5 HOH B2173 SITE 1 BC1 29 HIS A 21 GLY A 22 LYS A 24 TYR A 27 SITE 2 BC1 29 GLY A 34 ILE A 35 GLN A 36 THR A 42 SITE 3 BC1 29 GLY A 44 ASN A 45 TYR A 54 TYR A 65 SITE 4 BC1 29 TRP A 153 SER A 446 ARG A 458 HOH A 959 SITE 5 BC1 29 HOH A 967 HOH A1000 HOH A1004 HOH A1030 SITE 6 BC1 29 HOH A1037 HOH A1070 HOH A1163 HOH A1199 SITE 7 BC1 29 HOH A1235 HOH A1262 HOH A1421 HOH A1503 SITE 8 BC1 29 HOH A1520 SITE 1 BC2 31 HIS B 21 GLY B 22 LYS B 24 TYR B 27 SITE 2 BC2 31 ILE B 31 GLY B 34 ILE B 35 GLN B 36 SITE 3 BC2 31 THR B 42 GLY B 44 ASN B 45 TYR B 54 SITE 4 BC2 31 TYR B 65 TRP B 153 SER B 446 ARG B 458 SITE 5 BC2 31 CL B 709 HOH B1817 HOH B1828 HOH B1838 SITE 6 BC2 31 HOH B1853 HOH B1868 HOH B1942 HOH B1951 SITE 7 BC2 31 HOH B1953 HOH B1976 HOH B2007 HOH B2078 SITE 8 BC2 31 HOH B2113 HOH B2222 HOH B2403 CRYST1 167.770 134.880 46.870 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021336 0.00000 MTRIX1 1 -0.999517 -0.030412 -0.006347 -67.24366 1 MTRIX2 1 -0.030473 0.999489 0.009670 -2.11230 1 MTRIX3 1 0.006050 0.009858 -0.999933 93.34802 1