PDB Short entry for 1JUM HEADER TRANSCRIPTION 24-AUG-01 1JUM TITLE CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING TRANSCRIPTIONAL REPRESSOR TITLE 2 QACR BOUND TO THE NATURAL DRUG BERBERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION; COMPND 3 CHAIN: B, D, A, E; COMPND 4 SYNONYM: QACR REPRESSOR, ORF 188; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSK5210 KEYWDS MULTIDRUG BINDING, BERBERINE, PLANT ALKALOID, NATURAL DRUG, QACR, KEYWDS 2 MULTIDRUG RECOGNITION, S. AUREUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY,R.G.BRENNAN REVDAT 7 16-AUG-23 1JUM 1 REMARK REVDAT 6 27-OCT-21 1JUM 1 REMARK SEQADV REVDAT 5 26-FEB-20 1JUM 1 REMARK SEQADV REVDAT 4 04-OCT-17 1JUM 1 REMARK REVDAT 3 16-JUN-09 1JUM 1 REMARK REVDAT 2 24-FEB-09 1JUM 1 VERSN REVDAT 1 12-DEC-01 1JUM 0 JRNL AUTH M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY, JRNL AUTH 2 R.G.BRENNAN JRNL TITL STRUCTURAL MECHANISMS OF QACR INDUCTION AND MULTIDRUG JRNL TITL 2 RECOGNITION. JRNL REF SCIENCE V. 294 2158 2001 JRNL REFN ISSN 0036-8075 JRNL PMID 11739955 JRNL DOI 10.1126/SCIENCE.1066020 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 28584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2871 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.08000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 3.08000 REMARK 3 B13 (A**2) : -6.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.104 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX REMARK 200 DATA SCALING SOFTWARE : BIOTEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 84.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JUS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 87.15000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.15000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.15000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 87.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 87.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.15000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 87.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 MET D 1 REMARK 465 LYS D 188 REMARK 465 HIS D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 465 MET A 1 REMARK 465 LYS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 MET E 1 REMARK 465 LYS E 188 REMARK 465 HIS E 189 REMARK 465 HIS E 190 REMARK 465 HIS E 191 REMARK 465 HIS E 192 REMARK 465 HIS E 193 REMARK 465 HIS E 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 3 -73.08 -120.42 REMARK 500 LYS B 17 -80.57 -77.26 REMARK 500 GLU B 27 -77.27 -44.71 REMARK 500 ILE B 28 -74.00 -32.77 REMARK 500 LYS B 30 -74.29 -56.38 REMARK 500 LYS B 44 -95.13 -45.55 REMARK 500 GLN B 69 3.63 -62.84 REMARK 500 THR B 89 174.29 -55.67 REMARK 500 TYR B 92 -74.25 52.84 REMARK 500 TYR B 93 -38.17 -35.52 REMARK 500 LEU B 95 58.06 -92.87 REMARK 500 TYR B 106 13.09 -147.58 REMARK 500 SER B 111 6.28 -64.09 REMARK 500 ILE B 112 -76.38 -83.29 REMARK 500 ILE B 124 2.38 -69.45 REMARK 500 VAL B 145 -55.62 -19.71 REMARK 500 HIS B 164 87.52 -68.70 REMARK 500 GLU B 165 -28.37 171.97 REMARK 500 ASN B 167 118.48 -34.05 REMARK 500 LEU D 3 -30.90 -145.27 REMARK 500 ASN D 18 -22.20 -151.75 REMARK 500 ASN D 21 -8.65 -51.51 REMARK 500 SER D 34 -143.21 -130.78 REMARK 500 LYS D 44 -67.06 -19.46 REMARK 500 TYR D 92 -79.52 62.34 REMARK 500 TYR D 93 -23.02 -36.71 REMARK 500 PHE D 102 -76.03 -69.13 REMARK 500 THR D 104 19.75 -66.89 REMARK 500 GLU D 105 -34.09 -138.67 REMARK 500 SER D 111 -76.02 -46.77 REMARK 500 ASN D 143 -70.47 -63.59 REMARK 500 HIS D 164 27.89 -79.23 REMARK 500 ASN D 167 107.34 -45.51 REMARK 500 ILE D 168 -27.21 -39.23 REMARK 500 ASN D 184 27.70 -77.42 REMARK 500 TYR A 20 -72.83 -86.44 REMARK 500 SER A 34 -155.77 -123.10 REMARK 500 LYS A 44 -49.22 66.97 REMARK 500 THR A 89 11.13 -56.83 REMARK 500 TYR A 92 47.68 -99.88 REMARK 500 GLN A 96 -37.19 -27.96 REMARK 500 THR A 104 41.71 -83.73 REMARK 500 GLU A 105 -60.72 -154.16 REMARK 500 TYR A 106 39.94 -87.71 REMARK 500 ASN A 143 59.30 -152.28 REMARK 500 ASP A 144 44.65 173.36 REMARK 500 VAL A 145 -27.56 -38.88 REMARK 500 TYR E 20 -63.20 -90.67 REMARK 500 SER E 34 -143.57 -115.62 REMARK 500 PHE E 43 64.35 -113.76 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 40 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 904 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 639 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 579 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BER A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JT0 RELATED DB: PDB REMARK 900 QACR-DNA COMPLEX REMARK 900 RELATED ID: 1JT6 RELATED DB: PDB REMARK 900 QACR-DEQUALINIUM COMPLEX REMARK 900 RELATED ID: 1JTX RELATED DB: PDB REMARK 900 QACR-CRYSTAL VIOLET COMPLEX REMARK 900 RELATED ID: 1JTY RELATED DB: PDB REMARK 900 QACR-ETHIDIUM COMPLEX REMARK 900 RELATED ID: 1JUP RELATED DB: PDB REMARK 900 QACR-MALCHITE GREEN COMPLEX REMARK 900 RELATED ID: 1JUS RELATED DB: PDB REMARK 900 QACR-RHODAMINE 6G COMPLEX DBREF 1JUM B 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JUM D 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JUM A 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JUM E 1 188 UNP P0A0N4 QACR_STAAU 1 188 SEQADV 1JUM ALA B 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JUM SER B 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JUM HIS B 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS B 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS B 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS B 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS B 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS B 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM ALA D 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JUM SER D 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JUM HIS D 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS D 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS D 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS D 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS D 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS D 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM ALA A 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JUM SER A 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JUM HIS A 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS A 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS A 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS A 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS A 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS A 194 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM ALA E 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JUM SER E 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JUM HIS E 189 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS E 190 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS E 191 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS E 192 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS E 193 UNP P0A0N4 EXPRESSION TAG SEQADV 1JUM HIS E 194 UNP P0A0N4 EXPRESSION TAG SEQRES 1 B 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 B 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 B 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 B 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 B 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 B 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 B 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 B 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 B 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 B 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 B 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 B 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 B 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 B 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 B 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 D 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 D 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 D 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 D 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 D 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 D 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 D 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 D 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 D 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 D 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 D 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 D 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 D 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 D 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 A 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 A 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 A 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 A 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 A 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 A 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 A 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 A 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 A 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 A 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 A 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 A 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 A 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 A 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 A 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS SEQRES 1 E 194 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 E 194 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 E 194 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 E 194 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 E 194 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 E 194 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 E 194 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 E 194 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 E 194 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 E 194 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 E 194 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 E 194 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 E 194 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 E 194 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 E 194 LEU ASN GLY LEU SER LYS HIS HIS HIS HIS HIS HIS HET SO4 B 195 5 HET SO4 B 199 5 HET SO4 B 499 5 HET SO4 B 700 5 HET SO4 B1000 5 HET SO4 D 899 5 HET SO4 D 900 5 HET SO4 D 999 5 HET SO4 D1000 5 HET SO4 A 299 5 HET SO4 A 699 5 HET SO4 A 799 5 HET SO4 A 800 5 HET SO4 A 801 5 HET SO4 A 802 5 HET BER A 803 25 HET SO4 E 900 5 HET SO4 E 901 5 HET SO4 E 399 5 HET SO4 E 902 5 HET SO4 E 903 5 HET SO4 E 639 5 HET SO4 E 579 5 HETNAM SO4 SULFATE ION HETNAM BER BERBERINE FORMUL 5 SO4 22(O4 S 2-) FORMUL 20 BER C20 H18 N O4 1+ FORMUL 28 HOH *7(H2 O) HELIX 1 1 LEU B 3 ASN B 18 1 16 HELIX 2 2 THR B 24 SER B 32 1 9 HELIX 3 3 SER B 35 PHE B 43 1 9 HELIX 4 4 THR B 45 GLN B 69 1 25 HELIX 5 5 THR B 74 THR B 89 1 16 HELIX 6 6 TYR B 92 PRO B 94 5 3 HELIX 7 7 LEU B 95 GLU B 105 1 11 HELIX 8 8 ILE B 112 ILE B 124 1 13 HELIX 9 9 ILE B 124 GLY B 138 1 15 HELIX 10 10 ASP B 144 PHE B 162 1 19 HELIX 11 11 ASN B 167 SER B 187 1 21 HELIX 12 12 LEU D 3 GLY D 19 1 17 HELIX 13 13 THR D 24 SER D 32 1 9 HELIX 14 14 SER D 35 PHE D 43 1 9 HELIX 15 15 THR D 45 GLN D 69 1 25 HELIX 16 16 ILE D 70 ALA D 72 5 3 HELIX 17 17 THR D 74 LEU D 87 1 14 HELIX 18 18 TYR D 92 PRO D 94 5 3 HELIX 19 19 LEU D 95 TYR D 107 1 13 HELIX 20 20 THR D 109 LEU D 136 1 28 HELIX 21 21 ASN D 146 PHE D 162 1 17 HELIX 22 22 ASN D 167 ASN D 184 1 18 HELIX 23 23 ASN A 2 GLY A 19 1 18 HELIX 24 24 THR A 24 SER A 32 1 9 HELIX 25 25 SER A 35 LYS A 44 1 10 HELIX 26 26 THR A 45 GLN A 69 1 25 HELIX 27 27 ILE A 70 ALA A 72 5 3 HELIX 28 28 THR A 74 THR A 89 1 16 HELIX 29 29 LEU A 95 THR A 104 1 10 HELIX 30 30 THR A 109 ASN A 137 1 29 HELIX 31 31 ASP A 144 PHE A 162 1 19 HELIX 32 32 ASN A 167 GLY A 185 1 19 HELIX 33 33 ASN E 2 GLY E 19 1 18 HELIX 34 34 THR E 24 SER E 32 1 9 HELIX 35 35 SER E 35 PHE E 43 1 9 HELIX 36 36 THR E 45 ILE E 70 1 26 HELIX 37 37 THR E 74 THR E 89 1 16 HELIX 38 38 LEU E 95 TYR E 106 1 12 HELIX 39 39 ASN E 110 LEU E 136 1 27 HELIX 40 40 ASP E 144 PHE E 162 1 19 HELIX 41 41 ASN E 167 LEU E 186 1 20 SITE 1 AC1 2 HIS A 42 LYS E 17 SITE 1 AC2 4 THR D 24 THR D 25 SO4 D 999 HOH D1001 SITE 1 AC3 4 THR E 24 THR E 25 GLY E 26 LYS E 36 SITE 1 AC4 5 LYS B 66 ASN D 2 LEU D 3 LYS D 4 SITE 2 AC4 5 HIS D 42 SITE 1 AC5 5 LYS E 36 TYR E 40 THR E 45 LYS E 46 SITE 2 AC5 5 GLU E 47 SITE 1 AC6 4 LYS A 36 GLY A 37 LYS E 60 TYR E 91 SITE 1 AC7 5 TYR D 20 LYS D 46 GLU D 47 TYR D 106 SITE 2 AC7 5 SO4 D 899 SITE 1 AC8 2 HIS B 128 LYS B 132 SITE 1 AC9 3 LYS E 12 ILE E 53 GLU E 57 SITE 1 BC1 5 LYS A 36 TYR A 40 ASN E 2 ASP E 5 SITE 2 BC1 5 LYS E 6 SITE 1 BC2 3 THR A 24 THR A 25 LYS A 46 SITE 1 BC3 1 HIS E 42 SITE 1 BC4 5 GLN B 64 TYR B 91 GLN D 64 GLU D 90 SITE 2 BC4 5 TYR D 91 SITE 1 BC5 3 LYS B 67 TYR D 91 HOH D1002 SITE 1 BC6 2 ASN B 2 LYS B 6 SITE 1 BC7 3 THR B 24 THR B 25 LYS B 46 SITE 1 BC8 2 HIS A 128 LYS A 132 SITE 1 BC9 5 LEU A 3 LYS A 4 ASN A 38 HIS A 42 SITE 2 BC9 5 GLU E 13 SITE 1 CC1 3 LYS B 73 HIS D 164 GLU D 165 SITE 1 CC2 2 HIS E 128 LYS E 132 SITE 1 CC3 3 LYS D 173 LYS D 177 ASN E 143 SITE 1 CC4 1 HIS E 42 SITE 1 CC5 8 GLU A 57 GLU A 58 TRP A 61 THR A 89 SITE 2 CC5 8 TYR A 93 GLU A 120 TYR A 123 ASN A 157 CRYST1 174.300 174.300 96.300 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010384 0.00000