PDB Short entry for 1VS0 HEADER LIGASE 27-JAN-06 1VS0 TITLE CRYSTAL STRUCTURE OF THE LIGASE DOMAIN FROM M. TUBERCULOSIS LIGD AT TITLE 2 2.4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DNA LIGASE-LIKE PROTEIN RV0938/MT0965; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGD LIGASE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ADENYLATED FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0938, MT0965; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAEB1120; SOURCE 11 OTHER_DETAILS: TEV CLEAVABLE HIS TAG KEYWDS LIGASE; OB FOLD; NUCLEOTIDYL TRANSFERASE, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TBSGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.AKEY,A.MARTINS,J.ANIUKWU,M.S.GLICKMAN,S.SHUMAN,J.M.BERGER,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 13-JUL-11 1VS0 1 VERSN REVDAT 3 24-FEB-09 1VS0 1 VERSN REVDAT 2 23-MAY-06 1VS0 1 JRNL REVDAT 1 28-FEB-06 1VS0 0 JRNL AUTH D.AKEY,A.MARTINS,J.ANIUKWU,M.S.GLICKMAN,S.SHUMAN,J.M.BERGER JRNL TITL CRYSTAL STRUCTURE AND NONHOMOLOGOUS END-JOINING FUNCTION OF JRNL TITL 2 THE LIGASE COMPONENT OF MYCOBACTERIUM DNA LIGASE D. JRNL REF J.BIOL.CHEM. V. 281 13412 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16476729 JRNL DOI 10.1074/JBC.M513550200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4777 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.414 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4881 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6636 ; 1.600 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 616 ; 6.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;38.015 ;22.466 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;18.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;19.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3793 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2107 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3226 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 366 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.309 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 131 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.352 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 7 ; 0.137 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3090 ; 2.497 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4836 ; 3.715 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2060 ; 2.281 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1799 ; 3.070 ; 3.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 453 A 638 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6077 52.9960 125.3335 REMARK 3 T TENSOR REMARK 3 T11: -0.0623 T22: -0.0758 REMARK 3 T33: -0.0200 T12: 0.0325 REMARK 3 T13: 0.0163 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.1221 L22: 0.7415 REMARK 3 L33: 1.2200 L12: -0.0542 REMARK 3 L13: -0.0150 L23: 0.3666 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0440 S13: 0.0243 REMARK 3 S21: 0.0298 S22: -0.0600 S23: 0.0111 REMARK 3 S31: 0.0060 S32: -0.0271 S33: 0.0783 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 639 A 759 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7849 75.2068 154.8358 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: -0.1325 REMARK 3 T33: -0.0717 T12: -0.0521 REMARK 3 T13: 0.0742 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.0544 L22: 2.2426 REMARK 3 L33: 1.9458 L12: -0.3731 REMARK 3 L13: -0.2359 L23: 1.9652 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.0073 S13: 0.0316 REMARK 3 S21: 0.4854 S22: -0.1455 S23: 0.0148 REMARK 3 S31: 0.3277 S32: 0.0836 S33: 0.0702 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 453 B 638 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6871 55.7937 188.1162 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: -0.1107 REMARK 3 T33: -0.0869 T12: -0.1443 REMARK 3 T13: 0.0624 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.8818 L22: 0.8552 REMARK 3 L33: 1.1395 L12: 1.1439 REMARK 3 L13: -0.6549 L23: -0.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.1567 S12: -0.0956 S13: 0.0424 REMARK 3 S21: 0.1717 S22: -0.0896 S23: 0.0762 REMARK 3 S31: 0.0074 S32: 0.1108 S33: -0.0671 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 639 B 759 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9281 42.1284 214.3944 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: -0.0626 REMARK 3 T33: -0.0620 T12: -0.0530 REMARK 3 T13: 0.0234 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4184 L22: 1.0467 REMARK 3 L33: 2.8564 L12: 0.3464 REMARK 3 L13: 0.0470 L23: 0.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0464 S13: -0.0930 REMARK 3 S21: -0.1261 S22: 0.0697 S23: 0.0411 REMARK 3 S31: -0.1768 S32: 0.0775 S33: -0.0809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 1.020, 0.9798 REMARK 200 MONOCHROMATOR : ALS BEAMLINE 8.3.1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 3000, 25 MM ZNCL2, 100 MM REMARK 280 SODIUM ACETATE (PH 4.6), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 245.97133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.98567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.98567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 245.97133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. THERE ARE TWO REMARK 300 MONOMERS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 450 REMARK 465 ALA A 451 REMARK 465 VAL A 452 REMARK 465 GLY A 652 REMARK 465 GLU A 653 REMARK 465 GLY A 654 REMARK 465 GLY A 655 REMARK 465 ARG A 656 REMARK 465 SER A 657 REMARK 465 SER A 658 REMARK 465 GLY A 659 REMARK 465 GLY B 450 REMARK 465 ALA B 451 REMARK 465 VAL B 452 REMARK 465 GLY B 655 REMARK 465 ARG B 656 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 472 CD CE NZ REMARK 480 ARG A 504 CD NE CZ NH1 NH2 REMARK 480 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 712 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 715 CD CE NZ REMARK 480 LYS A 721 CD CE NZ REMARK 480 GLU B 454 CD OE1 OE2 REMARK 480 LYS B 472 CE NZ REMARK 480 ARG B 504 NE CZ NH1 NH2 REMARK 480 ARG B 550 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 623 NE CZ NH1 NH2 REMARK 480 ARG B 628 CD NE CZ NH1 NH2 REMARK 480 GLU B 653 CB CG CD OE1 OE2 REMARK 480 GLU B 685 CG CD OE1 OE2 REMARK 480 ARG B 686 NE CZ NH1 NH2 REMARK 480 GLU B 693 CD OE1 OE2 REMARK 480 ARG B 712 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 582 O HOH A 9022 1.88 REMARK 500 N PHE B 453 O HOH B 9083 2.08 REMARK 500 ND1 HIS A 524 O HOH A 9220 2.16 REMARK 500 O HOH A 9065 O HOH A 9166 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 456 OD2 ASP B 701 2674 1.94 REMARK 500 CL CL B 9008 O HOH B 9178 4456 1.99 REMARK 500 OD2 ASP A 456 OD2 ASP A 750 6655 2.06 REMARK 500 O HOH B 9037 O HOH B 9124 4566 2.16 REMARK 500 CL CL A 9007 O HOH A 9220 6665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 550 CB ARG A 550 CG 0.262 REMARK 500 GLU B 454 CG GLU B 454 CD -0.136 REMARK 500 LYS B 472 CD LYS B 472 CE -0.444 REMARK 500 ARG B 504 CD ARG B 504 NE -0.530 REMARK 500 ARG B 628 CG ARG B 628 CD -0.210 REMARK 500 ARG B 686 CD ARG B 686 NE 0.179 REMARK 500 GLU B 693 CG GLU B 693 CD -0.184 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 472 CG - CD - CE ANGL. DEV. = 36.5 DEGREES REMARK 500 LYS B 472 CD - CE - NZ ANGL. DEV. = 32.3 DEGREES REMARK 500 ARG B 504 CG - CD - NE ANGL. DEV. = 40.6 DEGREES REMARK 500 ARG B 504 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 VAL B 679 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 731 -75.13 -85.41 REMARK 500 ALA B 473 -27.16 -39.28 REMARK 500 ASP B 535 178.56 -36.19 REMARK 500 ARG B 548 117.49 -36.49 REMARK 500 ARG B 550 24.16 -74.64 REMARK 500 SER B 731 -80.45 -100.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 480 19.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 456 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A9083 DISTANCE = 5.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A9002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APK A 481 O1P REMARK 620 2 ASP A 483 OD1 90.4 REMARK 620 3 ASP A 483 OD2 145.3 55.8 REMARK 620 4 GLU A 613 OE1 137.3 125.4 76.2 REMARK 620 5 GLU A 613 OE2 101.1 99.3 92.9 55.4 REMARK 620 6 ASP A 522 OD2 103.4 101.1 78.5 92.4 147.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A9004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A9007 CL REMARK 620 2 GLU A 727 OE1 114.2 REMARK 620 3 ASP A 492 OD1 114.0 102.3 REMARK 620 4 HIS A 493 ND1 106.4 122.4 96.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A9009 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 454 OE2 REMARK 620 2 GLU A 454 OE1 58.3 REMARK 620 3 ASP B 701 OD2 87.2 129.0 REMARK 620 4 HIS B 699 NE2 143.7 87.2 126.7 REMARK 620 5 ASP A 750 OD1 123.6 106.0 60.8 73.3 REMARK 620 6 ASP B 701 OD1 94.3 152.3 44.2 118.6 92.1 REMARK 620 7 ASP A 750 OD2 72.5 74.8 58.6 111.5 51.5 102.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B9001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APK B 481 O1P REMARK 620 2 GLU B 613 OE2 84.4 REMARK 620 3 ASP B 483 OD2 99.4 105.1 REMARK 620 4 ASP B 483 OD1 148.2 112.7 51.3 REMARK 620 5 ASP B 522 OD2 106.0 137.2 113.6 80.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B9003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 727 OE2 REMARK 620 2 GLU B 727 OE1 53.9 REMARK 620 3 CL B9008 CL 87.6 113.2 REMARK 620 4 HIS B 493 ND1 90.4 124.3 104.9 REMARK 620 5 ASP B 492 OD2 161.0 107.1 103.4 101.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 9005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 9006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 9007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 9008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 9009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0938 RELATED DB: TARGETDB DBREF 1VS0 A 452 759 UNP P71571 Y938_MYCTU 452 759 DBREF 1VS0 B 452 759 UNP P71571 Y938_MYCTU 452 759 SEQADV 1VS0 GLY A 450 UNP P71571 CLONING ARTIFACT SEQADV 1VS0 ALA A 451 UNP P71571 CLONING ARTIFACT SEQADV 1VS0 MSE A 461 UNP P71571 MET 461 MODIFIED RESIDUE SEQADV 1VS0 APK A 481 UNP P71571 LYS 481 MODIFIED RESIDUE SEQADV 1VS0 MSE A 545 UNP P71571 MET 545 MODIFIED RESIDUE SEQADV 1VS0 MSE A 665 UNP P71571 MET 665 MODIFIED RESIDUE SEQADV 1VS0 MSE A 694 UNP P71571 MET 694 MODIFIED RESIDUE SEQADV 1VS0 GLY B 450 UNP P71571 CLONING ARTIFACT SEQADV 1VS0 ALA B 451 UNP P71571 CLONING ARTIFACT SEQADV 1VS0 MSE B 461 UNP P71571 MET 461 MODIFIED RESIDUE SEQADV 1VS0 APK B 481 UNP P71571 LYS 481 MODIFIED RESIDUE SEQADV 1VS0 MSE B 545 UNP P71571 MET 545 MODIFIED RESIDUE SEQADV 1VS0 MSE B 665 UNP P71571 MET 665 MODIFIED RESIDUE SEQADV 1VS0 MSE B 694 UNP P71571 MET 694 MODIFIED RESIDUE SEQRES 1 A 310 GLY ALA VAL PHE GLU PHE ASP ASN LEU ALA PRO MSE LEU SEQRES 2 A 310 ALA THR HIS GLY THR VAL ALA GLY LEU LYS ALA SER GLN SEQRES 3 A 310 TRP ALA PHE GLU GLY APK TRP ASP GLY TYR ARG LEU LEU SEQRES 4 A 310 VAL GLU ALA ASP HIS GLY ALA VAL ARG LEU ARG SER ARG SEQRES 5 A 310 SER GLY ARG ASP VAL THR ALA GLU TYR PRO GLN LEU ARG SEQRES 6 A 310 ALA LEU ALA GLU ASP LEU ALA ASP HIS HIS VAL VAL LEU SEQRES 7 A 310 ASP GLY GLU ALA VAL VAL LEU ASP SER SER GLY VAL PRO SEQRES 8 A 310 SER PHE SER GLN MSE GLN ASN ARG GLY ARG ASP THR ARG SEQRES 9 A 310 VAL GLU PHE TRP ALA PHE ASP LEU LEU TYR LEU ASP GLY SEQRES 10 A 310 ARG ALA LEU LEU GLY THR ARG TYR GLN ASP ARG ARG LYS SEQRES 11 A 310 LEU LEU GLU THR LEU ALA ASN ALA THR SER LEU THR VAL SEQRES 12 A 310 PRO GLU LEU LEU PRO GLY ASP GLY ALA GLN ALA PHE ALA SEQRES 13 A 310 CYS SER ARG LYS HIS GLY TRP GLU GLY VAL ILE ALA LYS SEQRES 14 A 310 ARG ARG ASP SER ARG TYR GLN PRO GLY ARG ARG CYS ALA SEQRES 15 A 310 SER TRP VAL LYS ASP LYS HIS TRP ASN THR GLN GLU VAL SEQRES 16 A 310 VAL ILE GLY GLY TRP ARG ALA GLY GLU GLY GLY ARG SER SEQRES 17 A 310 SER GLY VAL GLY SER LEU LEU MSE GLY ILE PRO GLY PRO SEQRES 18 A 310 GLY GLY LEU GLN PHE ALA GLY ARG VAL GLY THR GLY LEU SEQRES 19 A 310 SER GLU ARG GLU LEU ALA ASN LEU LYS GLU MSE LEU ALA SEQRES 20 A 310 PRO LEU HIS THR ASP GLU SER PRO PHE ASP VAL PRO LEU SEQRES 21 A 310 PRO ALA ARG ASP ALA LYS GLY ILE THR TYR VAL LYS PRO SEQRES 22 A 310 ALA LEU VAL ALA GLU VAL ARG TYR SER GLU TRP THR PRO SEQRES 23 A 310 GLU GLY ARG LEU ARG GLN SER SER TRP ARG GLY LEU ARG SEQRES 24 A 310 PRO ASP LYS LYS PRO SER GLU VAL VAL ARG GLU SEQRES 1 B 310 GLY ALA VAL PHE GLU PHE ASP ASN LEU ALA PRO MSE LEU SEQRES 2 B 310 ALA THR HIS GLY THR VAL ALA GLY LEU LYS ALA SER GLN SEQRES 3 B 310 TRP ALA PHE GLU GLY APK TRP ASP GLY TYR ARG LEU LEU SEQRES 4 B 310 VAL GLU ALA ASP HIS GLY ALA VAL ARG LEU ARG SER ARG SEQRES 5 B 310 SER GLY ARG ASP VAL THR ALA GLU TYR PRO GLN LEU ARG SEQRES 6 B 310 ALA LEU ALA GLU ASP LEU ALA ASP HIS HIS VAL VAL LEU SEQRES 7 B 310 ASP GLY GLU ALA VAL VAL LEU ASP SER SER GLY VAL PRO SEQRES 8 B 310 SER PHE SER GLN MSE GLN ASN ARG GLY ARG ASP THR ARG SEQRES 9 B 310 VAL GLU PHE TRP ALA PHE ASP LEU LEU TYR LEU ASP GLY SEQRES 10 B 310 ARG ALA LEU LEU GLY THR ARG TYR GLN ASP ARG ARG LYS SEQRES 11 B 310 LEU LEU GLU THR LEU ALA ASN ALA THR SER LEU THR VAL SEQRES 12 B 310 PRO GLU LEU LEU PRO GLY ASP GLY ALA GLN ALA PHE ALA SEQRES 13 B 310 CYS SER ARG LYS HIS GLY TRP GLU GLY VAL ILE ALA LYS SEQRES 14 B 310 ARG ARG ASP SER ARG TYR GLN PRO GLY ARG ARG CYS ALA SEQRES 15 B 310 SER TRP VAL LYS ASP LYS HIS TRP ASN THR GLN GLU VAL SEQRES 16 B 310 VAL ILE GLY GLY TRP ARG ALA GLY GLU GLY GLY ARG SER SEQRES 17 B 310 SER GLY VAL GLY SER LEU LEU MSE GLY ILE PRO GLY PRO SEQRES 18 B 310 GLY GLY LEU GLN PHE ALA GLY ARG VAL GLY THR GLY LEU SEQRES 19 B 310 SER GLU ARG GLU LEU ALA ASN LEU LYS GLU MSE LEU ALA SEQRES 20 B 310 PRO LEU HIS THR ASP GLU SER PRO PHE ASP VAL PRO LEU SEQRES 21 B 310 PRO ALA ARG ASP ALA LYS GLY ILE THR TYR VAL LYS PRO SEQRES 22 B 310 ALA LEU VAL ALA GLU VAL ARG TYR SER GLU TRP THR PRO SEQRES 23 B 310 GLU GLY ARG LEU ARG GLN SER SER TRP ARG GLY LEU ARG SEQRES 24 B 310 PRO ASP LYS LYS PRO SER GLU VAL VAL ARG GLU MODRES 1VS0 MSE A 461 MET SELENOMETHIONINE MODRES 1VS0 APK A 481 LYS MODRES 1VS0 MSE A 545 MET SELENOMETHIONINE MODRES 1VS0 MSE A 665 MET SELENOMETHIONINE MODRES 1VS0 MSE A 694 MET SELENOMETHIONINE MODRES 1VS0 MSE B 461 MET SELENOMETHIONINE MODRES 1VS0 APK B 481 LYS MODRES 1VS0 MSE B 545 MET SELENOMETHIONINE MODRES 1VS0 MSE B 665 MET SELENOMETHIONINE MODRES 1VS0 MSE B 694 MET SELENOMETHIONINE HET MSE A 461 8 HET APK A 481 31 HET MSE A 545 8 HET MSE A 665 8 HET MSE A 694 8 HET MSE B 461 8 HET APK B 481 31 HET MSE B 545 8 HET MSE B 665 8 HET MSE B 694 16 HET ZN B9001 1 HET ZN A9002 1 HET ZN B9003 1 HET ZN A9004 1 HET CL A9005 1 HET CL B9006 1 HET CL A9007 1 HET CL B9008 1 HET MG A9009 1 HETNAM MSE SELENOMETHIONINE HETNAM APK 5'-O-[(S)-{[(5S)-5-AMINO-6-OXOHEXYL]AMINO}(HYDROXY) HETNAM 2 APK PHOSPHORYL]ADENOSINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 APK 2(C16 H26 N7 O7 P) FORMUL 3 ZN 4(ZN 2+) FORMUL 7 CL 4(CL 1-) FORMUL 11 MG MG 2+ FORMUL 12 HOH *407(H2 O) HELIX 1 1 GLU A 454 LEU A 458 5 5 HELIX 2 2 VAL A 506 GLN A 512 5 7 HELIX 3 3 LEU A 513 LEU A 520 1 8 HELIX 4 4 SER A 541 ASN A 547 1 7 HELIX 5 5 ARG A 573 THR A 588 1 16 HELIX 6 6 ASP A 599 HIS A 610 1 12 HELIX 7 7 SER A 684 ALA A 696 1 13 HELIX 8 8 PRO A 697 HIS A 699 5 3 HELIX 9 9 PRO A 710 LYS A 715 1 6 HELIX 10 10 LYS A 752 VAL A 756 5 5 HELIX 11 11 GLU B 454 LEU B 458 5 5 HELIX 12 12 VAL B 506 GLN B 512 5 7 HELIX 13 13 LEU B 513 LEU B 520 1 8 HELIX 14 14 SER B 541 ASN B 547 1 7 HELIX 15 15 ARG B 573 THR B 588 1 16 HELIX 16 16 ASP B 599 GLY B 611 1 13 HELIX 17 17 SER B 684 ALA B 696 1 13 HELIX 18 18 PRO B 710 LYS B 715 1 6 HELIX 19 19 LYS B 752 VAL B 756 5 5 SHEET 1 A 4 LEU A 462 HIS A 465 0 SHEET 2 A 4 ARG A 629 LYS A 637 1 O TRP A 633 N THR A 464 SHEET 3 A 4 GLY A 614 ARG A 619 -1 N ALA A 617 O VAL A 634 SHEET 4 A 4 TRP A 476 APK A 481 -1 N GLU A 479 O ILE A 616 SHEET 1 B 5 ALA A 495 SER A 500 0 SHEET 2 B 5 TYR A 485 ASP A 492 -1 N GLU A 490 O ARG A 497 SHEET 3 B 5 HIS A 524 VAL A 532 -1 O ALA A 531 N TYR A 485 SHEET 4 B 5 GLU A 555 LEU A 564 -1 O LEU A 562 N VAL A 526 SHEET 5 B 5 ARG A 567 ALA A 568 -1 O ARG A 567 N LEU A 564 SHEET 1 C 4 GLY A 672 VAL A 679 0 SHEET 2 C 4 SER A 662 GLY A 669 -1 N ILE A 667 O GLN A 674 SHEET 3 C 4 ASN A 640 ARG A 650 -1 N GLY A 647 O LEU A 664 SHEET 4 C 4 ILE A 717 TYR A 719 -1 O THR A 718 N TRP A 649 SHEET 1 D 5 GLY A 672 VAL A 679 0 SHEET 2 D 5 SER A 662 GLY A 669 -1 N ILE A 667 O GLN A 674 SHEET 3 D 5 ASN A 640 ARG A 650 -1 N GLY A 647 O LEU A 664 SHEET 4 D 5 VAL A 725 TYR A 730 -1 O TYR A 730 N ASN A 640 SHEET 5 D 5 SER A 743 LEU A 747 -1 O SER A 743 N ARG A 729 SHEET 1 E 4 LEU B 462 HIS B 465 0 SHEET 2 E 4 ARG B 629 LYS B 637 1 O LYS B 635 N THR B 464 SHEET 3 E 4 GLY B 614 ARG B 619 -1 N ALA B 617 O VAL B 634 SHEET 4 E 4 TRP B 476 GLU B 479 -1 N ALA B 477 O LYS B 618 SHEET 1 F 5 ALA B 495 SER B 500 0 SHEET 2 F 5 TYR B 485 ASP B 492 -1 N GLU B 490 O ARG B 497 SHEET 3 F 5 HIS B 524 VAL B 532 -1 O ALA B 531 N TYR B 485 SHEET 4 F 5 GLU B 555 LEU B 564 -1 O LEU B 562 N VAL B 526 SHEET 5 F 5 ARG B 567 ALA B 568 -1 O ARG B 567 N LEU B 564 SHEET 1 G 5 GLY B 672 VAL B 679 0 SHEET 2 G 5 VAL B 660 GLY B 669 -1 N MSE B 665 O ALA B 676 SHEET 3 G 5 ASN B 640 ALA B 651 -1 N VAL B 645 O GLY B 666 SHEET 4 G 5 ILE B 717 VAL B 720 -1 O THR B 718 N TRP B 649 SHEET 5 G 5 HIS B 699 THR B 700 -1 N THR B 700 O TYR B 719 SHEET 1 H 5 GLY B 672 VAL B 679 0 SHEET 2 H 5 VAL B 660 GLY B 669 -1 N MSE B 665 O ALA B 676 SHEET 3 H 5 ASN B 640 ALA B 651 -1 N VAL B 645 O GLY B 666 SHEET 4 H 5 VAL B 725 TYR B 730 -1 O TYR B 730 N ASN B 640 SHEET 5 H 5 SER B 743 LEU B 747 -1 O GLY B 746 N GLU B 727 LINK C PRO A 460 N MSE A 461 1555 1555 1.33 LINK C MSE A 461 N LEU A 462 1555 1555 1.33 LINK C GLY A 480 N APK A 481 1555 1555 1.57 LINK C APK A 481 N TRP A 482 1555 1555 1.75 LINK O1P APK A 481 ZN ZN A9002 1555 1555 1.97 LINK C GLN A 544 N MSE A 545 1555 1555 1.34 LINK C MSE A 545 N GLN A 546 1555 1555 1.32 LINK C LEU A 664 N MSE A 665 1555 1555 1.33 LINK C MSE A 665 N GLY A 666 1555 1555 1.32 LINK C GLU A 693 N MSE A 694 1555 1555 1.33 LINK C MSE A 694 N LEU A 695 1555 1555 1.33 LINK ZN ZN A9002 OD1 ASP A 483 1555 1555 2.15 LINK ZN ZN A9002 OD2 ASP A 483 1555 1555 2.46 LINK ZN ZN A9002 OE1 GLU A 613 1555 1555 2.30 LINK ZN ZN A9002 OE2 GLU A 613 1555 1555 2.41 LINK ZN ZN A9004 CL CL A9007 1555 1555 2.24 LINK ZN ZN A9004 OE1 GLU A 727 1555 1555 1.91 LINK MG MG A9009 OE2 GLU A 454 1555 1555 2.26 LINK MG MG A9009 OE1 GLU A 454 1555 1555 2.23 LINK C PRO B 460 N MSE B 461 1555 1555 1.33 LINK C MSE B 461 N LEU B 462 1555 1555 1.33 LINK C GLY B 480 N APK B 481 1555 1555 1.81 LINK O1P APK B 481 ZN ZN B9001 1555 1555 1.90 LINK C APK B 481 N TRP B 482 1555 1555 1.71 LINK C GLN B 544 N MSE B 545 1555 1555 1.33 LINK C MSE B 545 N GLN B 546 1555 1555 1.31 LINK C LEU B 664 N MSE B 665 1555 1555 1.33 LINK C MSE B 665 N GLY B 666 1555 1555 1.33 LINK C GLU B 693 N BMSE B 694 1555 1555 1.33 LINK C GLU B 693 N AMSE B 694 1555 1555 1.33 LINK C AMSE B 694 N LEU B 695 1555 1555 1.33 LINK C BMSE B 694 N LEU B 695 1555 1555 1.33 LINK ZN ZN B9001 OE2 GLU B 613 1555 1555 1.69 LINK ZN ZN B9001 OD2 ASP B 483 1555 1555 2.16 LINK ZN ZN B9001 OD1 ASP B 483 1555 1555 2.76 LINK ZN ZN B9003 OE2 GLU B 727 1555 1555 2.61 LINK ZN ZN B9003 OE1 GLU B 727 1555 1555 2.11 LINK ZN ZN B9003 CL CL B9008 1555 1555 1.89 LINK ZN ZN A9002 OD2 ASP A 522 1555 6665 2.00 LINK ZN ZN A9004 OD1 ASP A 492 1555 6665 1.91 LINK ZN ZN A9004 ND1 HIS A 493 1555 6665 2.02 LINK MG MG A9009 OD2 ASP B 701 1555 2674 3.11 LINK MG MG A9009 NE2 HIS B 699 1555 2674 1.97 LINK MG MG A9009 OD1 ASP A 750 1555 6655 2.57 LINK MG MG A9009 OD1 ASP B 701 1555 2674 1.91 LINK MG MG A9009 OD2 ASP A 750 1555 6655 2.43 LINK ZN ZN B9001 OD2 ASP B 522 1555 4456 1.94 LINK ZN ZN B9003 ND1 HIS B 493 1555 4456 2.12 LINK ZN ZN B9003 OD2 ASP B 492 1555 4456 1.93 SITE 1 AC1 4 APK B 481 ASP B 483 ASP B 522 GLU B 613 SITE 1 AC2 4 APK A 481 ASP A 483 ASP A 522 GLU A 613 SITE 1 AC3 4 ASP B 492 HIS B 493 GLU B 727 CL B9008 SITE 1 AC4 4 ASP A 492 HIS A 493 GLU A 727 CL A9007 SITE 1 AC5 4 ALA A 463 APK A 481 LYS A 635 HOH A9163 SITE 1 AC6 4 ALA B 463 APK B 481 HOH B9118 HOH B9188 SITE 1 AC7 6 ASP A 492 HIS A 493 GLU A 727 ARG A 748 SITE 2 AC7 6 ZN A9004 HOH A9220 SITE 1 AC8 7 ASP B 492 HIS B 493 HIS B 524 GLU B 727 SITE 2 AC8 7 ARG B 748 ZN B9003 HOH B9178 SITE 1 AC9 5 GLU A 454 ASP A 456 ASP A 750 HIS B 699 SITE 2 AC9 5 ASP B 701 CRYST1 57.102 57.102 368.957 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017510 0.010110 0.000000 0.00000 SCALE2 0.000000 0.020220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002710 0.00000