PDB Short entry for 3D38 HEADER PHOTOSYNTHESIS 09-MAY-08 3D38 TITLE CRYSTAL STRUCTURE OF NEW TRIGONAL FORM OF PHOTOSYNTHETIC REACTION TITLE 2 CENTER FROM BLASTOCHLORIS VIRIDIS. CRYSTALS GROWN IN MICROFLUIDICS BY TITLE 3 DETERGENT CAPTURE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: CYTOCHROME C558/C559; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REACTION CENTER PROTEIN H CHAIN; COMPND 7 CHAIN: H; COMPND 8 SYNONYM: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REACTION CENTER PROTEIN L CHAIN; COMPND 11 CHAIN: L; COMPND 12 SYNONYM: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: REACTION CENTER PROTEIN M CHAIN; COMPND 15 CHAIN: M; COMPND 16 SYNONYM: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1079; SOURCE 4 ATCC: 19567; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 7 ORGANISM_TAXID: 1079; SOURCE 8 ATCC: 19567; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 11 ORGANISM_TAXID: 1079; SOURCE 12 ATCC: 19567; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 15 ORGANISM_TAXID: 1079; SOURCE 16 ATCC: 19567 KEYWDS DETERGENT EXTRACTION, REACTION CENTER, MICROFLUDICS, PLUGS, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 ACCELERATED TECHNOLOGIES CENTER FOR GENE TO 3D STRUCTURE, ATCG3D, KEYWDS 4 ELECTRON TRANSPORT, HEME, IRON, LIPOPROTEIN, MEMBRANE, METAL- KEYWDS 5 BINDING, PHOTOSYNTHESIS, TRANSPORT, BACTERIOCHLOROPHYLL, KEYWDS 6 CHLOROPHYLL, CHROMOPHORE, FORMYLATION, TRANSMEMBRANE, MAGNESIUM EXPDTA X-RAY DIFFRACTION AUTHOR L.LI,S.H.M.NACHTERGAELE,A.M.SEDDON,V.TERESHKO,N.PONOMARENKO, AUTHOR 2 R.F.ISMAGILOV,ACCELERATED TECHNOLOGIES CENTER FOR GENE TO 3D AUTHOR 3 STRUCTURE (ATCG3D) REVDAT 6 30-AUG-23 3D38 1 REMARK LINK REVDAT 5 13-JUL-11 3D38 1 VERSN REVDAT 4 01-SEP-09 3D38 1 JRNL TITLE REVDAT 3 31-MAR-09 3D38 1 HETNAM REVDAT 2 24-FEB-09 3D38 1 VERSN REVDAT 1 08-JUL-08 3D38 0 JRNL AUTH L.LI,S.NACHTERGAELE,A.M.SEDDON,V.TERESHKO,N.PONOMARENKO, JRNL AUTH 2 R.F.ISMAGILOV JRNL TITL SIMPLE HOST-GUEST CHEMISTRY TO MODULATE THE PROCESS OF JRNL TITL 2 CONCENTRATION AND CRYSTALLIZATION OF MEMBRANE PROTEINS BY JRNL TITL 3 DETERGENT CAPTURE IN A MICROFLUIDIC DEVICE. JRNL REF J.AM.CHEM.SOC. V. 130 14324 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18831551 JRNL DOI 10.1021/JA805361J REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 870 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.88000 REMARK 3 B22 (A**2) : 3.88000 REMARK 3 B33 (A**2) : -5.82000 REMARK 3 B12 (A**2) : 1.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.479 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10503 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14441 ; 1.437 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1173 ; 5.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 418 ;32.642 ;22.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1395 ;17.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;15.265 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1447 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8070 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5857 ; 0.552 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9417 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4646 ; 1.302 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5024 ; 2.275 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62037 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I5N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MG/ML PROTEIN, 4.6 MM LDAO, 10 MM REMARK 280 METHYL-BETA-CYCLODEXTRIN, 1.6-1.7 M SULFATE, 4.5% W/V REMARK 280 TRIETHYLAMMONIUM PHOSPHATE PH 6.0, 3% 1,2,3-HEPTANETRIOL, 30 MM REMARK 280 NAH2PO4-NA2HPO4 PH 6.0, PLUG-BASED MICROFLUIDICS, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.79700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.59400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.59400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.79700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 333 REMARK 465 ALA C 334 REMARK 465 ALA C 335 REMARK 465 LYS C 336 REMARK 465 PRO H 46 REMARK 465 LEU H 47 REMARK 465 GLY H 48 REMARK 465 LEU H 49 REMARK 465 VAL H 50 REMARK 465 LYS H 51 REMARK 465 LEU H 52 REMARK 465 ALA H 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 332 CG CD CE NZ REMARK 470 GLU H 45 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 305 CAB HEC C 404 1.81 REMARK 500 SG CYS C 308 CAC HEC C 404 1.85 REMARK 500 SG CYS C 247 CAC HEC C 403 1.95 REMARK 500 SG CYS C 132 CAB HEC C 402 2.08 REMARK 500 OD1 ASN M 26 O HOH M 840 2.10 REMARK 500 SG CYS C 135 CAC HEC C 402 2.12 REMARK 500 SG CYS C 90 CAC HEC C 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU M 70 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 52 1.21 -68.52 REMARK 500 SER C 82 78.92 -152.73 REMARK 500 GLU C 99 36.45 -82.92 REMARK 500 PRO C 103 -18.73 -48.81 REMARK 500 TRP C 121 51.84 -99.18 REMARK 500 HIS C 124 -67.74 -97.14 REMARK 500 ALA C 126 -124.40 55.70 REMARK 500 LEU C 148 12.88 -69.47 REMARK 500 TYR C 182 7.70 90.97 REMARK 500 ALA C 184 40.31 -107.68 REMARK 500 ASN C 186 48.75 -67.45 REMARK 500 ASN C 196 -165.64 -118.86 REMARK 500 VAL C 214 13.21 -140.38 REMARK 500 TRP C 256 -145.13 -95.23 REMARK 500 LEU C 277 -60.27 -28.89 REMARK 500 LEU C 285 -7.07 -55.49 REMARK 500 ARG C 296 6.16 -66.93 REMARK 500 GLN C 297 36.68 -141.06 REMARK 500 ASP C 304 -168.31 -112.68 REMARK 500 ALA H 7 146.70 -39.80 REMARK 500 HIS H 9 52.95 35.26 REMARK 500 TYR H 31 -76.70 -94.96 REMARK 500 GLU H 35 -36.33 -34.89 REMARK 500 HIS H 72 67.95 -106.35 REMARK 500 PRO H 114 1.95 -61.43 REMARK 500 ALA H 121 129.32 -33.26 REMARK 500 GLU H 122 30.39 -71.81 REMARK 500 GLU H 147 76.95 -25.30 REMARK 500 ARG H 153 105.29 -58.48 REMARK 500 ALA H 188 103.07 -57.18 REMARK 500 ALA H 191 46.50 33.50 REMARK 500 PRO H 222 134.73 -36.52 REMARK 500 GLN H 225 -76.74 -80.45 REMARK 500 ALA H 249 -31.76 -38.05 REMARK 500 VAL L 31 -85.39 -87.52 REMARK 500 VAL L 133 -64.75 -126.79 REMARK 500 LEU L 165 -55.66 67.28 REMARK 500 ASP L 204 174.63 -59.27 REMARK 500 LYS L 207 -161.59 -103.56 REMARK 500 PRO M 32 89.92 -49.14 REMARK 500 SER M 35 106.71 -160.89 REMARK 500 LEU M 51 -111.06 -79.01 REMARK 500 ALA M 60 -71.15 -60.06 REMARK 500 CYS M 160 -34.90 -136.06 REMARK 500 ILE M 177 -73.17 -56.16 REMARK 500 ASN M 193 97.14 87.25 REMARK 500 ASP M 238 76.75 -151.55 REMARK 500 ARG M 239 135.24 -35.62 REMARK 500 ALA M 258 -162.44 -112.04 REMARK 500 ASP M 314 108.49 -48.36 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 74 SD REMARK 620 2 HEC C 401 NA 87.8 REMARK 620 3 HEC C 401 NB 86.4 89.2 REMARK 620 4 HEC C 401 NC 92.8 177.2 88.1 REMARK 620 5 HEC C 401 ND 99.9 90.8 173.7 91.8 REMARK 620 6 HIS C 91 NE2 168.4 95.8 82.7 83.1 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 110 SD REMARK 620 2 HEC C 402 NA 81.3 REMARK 620 3 HEC C 402 NB 92.1 90.8 REMARK 620 4 HEC C 402 NC 96.3 177.2 90.7 REMARK 620 5 HEC C 402 ND 90.8 88.5 176.9 90.1 REMARK 620 6 HIS C 136 NE2 165.0 88.5 76.9 94.1 100.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 124 NE2 REMARK 620 2 HEC C 404 NA 94.2 REMARK 620 3 HEC C 404 NB 94.0 90.8 REMARK 620 4 HEC C 404 NC 91.6 174.2 89.2 REMARK 620 5 HEC C 404 ND 94.0 90.3 171.9 88.9 REMARK 620 6 HIS C 309 NE2 173.1 92.6 84.3 81.7 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 233 SD REMARK 620 2 HEC C 403 NA 90.1 REMARK 620 3 HEC C 403 NB 94.2 90.1 REMARK 620 4 HEC C 403 NC 90.5 179.4 89.8 REMARK 620 5 HEC C 403 ND 87.4 91.8 177.6 88.4 REMARK 620 6 HIS C 248 NE2 172.2 94.4 92.3 85.1 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCB L 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 153 NE2 REMARK 620 2 BCB L 401 NA 100.0 REMARK 620 3 BCB L 401 NB 101.6 89.3 REMARK 620 4 BCB L 401 NC 91.7 167.7 91.9 REMARK 620 5 BCB L 401 ND 92.5 91.8 165.5 84.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCB L 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 173 NE2 REMARK 620 2 BCB L 400 NA 87.1 REMARK 620 3 BCB L 400 NB 86.2 90.1 REMARK 620 4 BCB L 400 NC 99.0 173.7 92.0 REMARK 620 5 BCB L 400 ND 102.0 92.1 171.6 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 M 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 96.5 REMARK 620 3 HIS M 217 NE2 105.7 97.4 REMARK 620 4 GLU M 232 OE1 98.5 91.6 153.0 REMARK 620 5 GLU M 232 OE2 154.2 79.7 100.1 56.5 REMARK 620 6 HIS M 264 NE2 81.7 163.0 99.4 72.1 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCB M 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 180 NE2 REMARK 620 2 BCB M 400 NA 102.0 REMARK 620 3 BCB M 400 NB 92.5 90.6 REMARK 620 4 BCB M 400 NC 94.3 163.7 89.3 REMARK 620 5 BCB M 400 ND 106.3 88.6 161.0 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCB M 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 200 NE2 REMARK 620 2 BCB M 401 NA 97.0 REMARK 620 3 BCB M 401 NB 88.0 88.9 REMARK 620 4 BCB M 401 NC 88.0 174.9 92.0 REMARK 620 5 BCB M 401 ND 99.4 91.7 172.5 86.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 M 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCB L 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCB L 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPB L 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MQ9 M 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 L 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 L 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCB M 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCB M 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPB M 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NS5 M 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA H 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA L 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA H 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA M 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTO H 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTO C 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTO C 707 DBREF 3D38 C 1 336 UNP P07173 CYCR_RHOVI 21 356 DBREF 3D38 H 1 258 UNP P06008 RCEH_RHOVI 1 258 DBREF 3D38 L 1 273 UNP P06009 RCEL_RHOVI 2 274 DBREF 3D38 M 1 323 UNP P06010 RCEM_RHOVI 2 324 SEQRES 1 C 336 CYS PHE GLU PRO PRO PRO ALA THR THR THR GLN THR GLY SEQRES 2 C 336 PHE ARG GLY LEU SER MET GLY GLU VAL LEU HIS PRO ALA SEQRES 3 C 336 THR VAL LYS ALA LYS LYS GLU ARG ASP ALA GLN TYR PRO SEQRES 4 C 336 PRO ALA LEU ALA ALA VAL LYS ALA GLU GLY PRO PRO VAL SEQRES 5 C 336 SER GLN VAL TYR LYS ASN VAL LYS VAL LEU GLY ASN LEU SEQRES 6 C 336 THR GLU ALA GLU PHE LEU ARG THR MET THR ALA ILE THR SEQRES 7 C 336 GLU TRP VAL SER PRO GLN GLU GLY CYS THR TYR CYS HIS SEQRES 8 C 336 ASP GLU ASN ASN LEU ALA SER GLU ALA LYS TYR PRO TYR SEQRES 9 C 336 VAL VAL ALA ARG ARG MET LEU GLU MET THR ARG ALA ILE SEQRES 10 C 336 ASN THR ASN TRP THR GLN HIS VAL ALA GLN THR GLY VAL SEQRES 11 C 336 THR CYS TYR THR CYS HIS ARG GLY THR PRO LEU PRO PRO SEQRES 12 C 336 TYR VAL ARG TYR LEU GLU PRO THR LEU PRO LEU ASN ASN SEQRES 13 C 336 ARG GLU THR PRO THR HIS VAL GLU ARG VAL GLU THR ARG SEQRES 14 C 336 SER GLY TYR VAL VAL ARG LEU ALA LYS TYR THR ALA TYR SEQRES 15 C 336 SER ALA LEU ASN TYR ASP PRO PHE THR MET PHE LEU ALA SEQRES 16 C 336 ASN ASP LYS ARG GLN VAL ARG VAL VAL PRO GLN THR ALA SEQRES 17 C 336 LEU PRO LEU VAL GLY VAL SER ARG GLY LYS GLU ARG ARG SEQRES 18 C 336 PRO LEU SER ASP ALA TYR ALA THR PHE ALA LEU MET MET SEQRES 19 C 336 SER ILE SER ASP SER LEU GLY THR ASN CYS THR PHE CYS SEQRES 20 C 336 HIS ASN ALA GLN THR PHE GLU SER TRP GLY LYS LYS SER SEQRES 21 C 336 THR PRO GLN ARG ALA ILE ALA TRP TRP GLY ILE ARG MET SEQRES 22 C 336 VAL ARG ASP LEU ASN MET ASN TYR LEU ALA PRO LEU ASN SEQRES 23 C 336 ALA SER LEU PRO ALA SER ARG LEU GLY ARG GLN GLY GLU SEQRES 24 C 336 ALA PRO GLN ALA ASP CYS ARG THR CYS HIS GLN GLY VAL SEQRES 25 C 336 THR LYS PRO LEU PHE GLY ALA SER ARG LEU LYS ASP TYR SEQRES 26 C 336 PRO GLU LEU GLY PRO ILE LYS ALA ALA ALA LYS SEQRES 1 H 258 FME TYR HIS GLY ALA LEU ALA GLN HIS LEU ASP ILE ALA SEQRES 2 H 258 GLN LEU VAL TRP TYR ALA GLN TRP LEU VAL ILE TRP THR SEQRES 3 H 258 VAL VAL LEU LEU TYR LEU ARG ARG GLU ASP ARG ARG GLU SEQRES 4 H 258 GLY TYR PRO LEU VAL GLU PRO LEU GLY LEU VAL LYS LEU SEQRES 5 H 258 ALA PRO GLU ASP GLY GLN VAL TYR GLU LEU PRO TYR PRO SEQRES 6 H 258 LYS THR PHE VAL LEU PRO HIS GLY GLY THR VAL THR VAL SEQRES 7 H 258 PRO ARG ARG ARG PRO GLU THR ARG GLU LEU LYS LEU ALA SEQRES 8 H 258 GLN THR ASP GLY PHE GLU GLY ALA PRO LEU GLN PRO THR SEQRES 9 H 258 GLY ASN PRO LEU VAL ASP ALA VAL GLY PRO ALA SER TYR SEQRES 10 H 258 ALA GLU ARG ALA GLU VAL VAL ASP ALA THR VAL ASP GLY SEQRES 11 H 258 LYS ALA LYS ILE VAL PRO LEU ARG VAL ALA THR ASP PHE SEQRES 12 H 258 SER ILE ALA GLU GLY ASP VAL ASP PRO ARG GLY LEU PRO SEQRES 13 H 258 VAL VAL ALA ALA ASP GLY VAL GLU ALA GLY THR VAL THR SEQRES 14 H 258 ASP LEU TRP VAL ASP ARG SER GLU HIS TYR PHE ARG TYR SEQRES 15 H 258 LEU GLU LEU SER VAL ALA GLY SER ALA ARG THR ALA LEU SEQRES 16 H 258 ILE PRO LEU GLY PHE CYS ASP VAL LYS LYS ASP LYS ILE SEQRES 17 H 258 VAL VAL THR SER ILE LEU SER GLU GLN PHE ALA ASN VAL SEQRES 18 H 258 PRO ARG LEU GLN SER ARG ASP GLN ILE THR LEU ARG GLU SEQRES 19 H 258 GLU ASP LYS VAL SER ALA TYR TYR ALA GLY GLY LEU LEU SEQRES 20 H 258 TYR ALA THR PRO GLU ARG ALA GLU SER LEU LEU SEQRES 1 L 273 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL ARG GLY SEQRES 2 L 273 GLY THR LEU ILE GLY GLY ASP LEU PHE ASP PHE TRP VAL SEQRES 3 L 273 GLY PRO TYR PHE VAL GLY PHE PHE GLY VAL SER ALA ILE SEQRES 4 L 273 PHE PHE ILE PHE LEU GLY VAL SER LEU ILE GLY TYR ALA SEQRES 5 L 273 ALA SER GLN GLY PRO THR TRP ASP PRO PHE ALA ILE SER SEQRES 6 L 273 ILE ASN PRO PRO ASP LEU LYS TYR GLY LEU GLY ALA ALA SEQRES 7 L 273 PRO LEU LEU GLU GLY GLY PHE TRP GLN ALA ILE THR VAL SEQRES 8 L 273 CYS ALA LEU GLY ALA PHE ILE SER TRP MET LEU ARG GLU SEQRES 9 L 273 VAL GLU ILE SER ARG LYS LEU GLY ILE GLY TRP HIS VAL SEQRES 10 L 273 PRO LEU ALA PHE CYS VAL PRO ILE PHE MET PHE CYS VAL SEQRES 11 L 273 LEU GLN VAL PHE ARG PRO LEU LEU LEU GLY SER TRP GLY SEQRES 12 L 273 HIS ALA PHE PRO TYR GLY ILE LEU SER HIS LEU ASP TRP SEQRES 13 L 273 VAL ASN ASN PHE GLY TYR GLN TYR LEU ASN TRP HIS TYR SEQRES 14 L 273 ASN PRO GLY HIS MET SER SER VAL SER PHE LEU PHE VAL SEQRES 15 L 273 ASN ALA MET ALA LEU GLY LEU HIS GLY GLY LEU ILE LEU SEQRES 16 L 273 SER VAL ALA ASN PRO GLY ASP GLY ASP LYS VAL LYS THR SEQRES 17 L 273 ALA GLU HIS GLU ASN GLN TYR PHE ARG ASP VAL VAL GLY SEQRES 18 L 273 TYR SER ILE GLY ALA LEU SER ILE HIS ARG LEU GLY LEU SEQRES 19 L 273 PHE LEU ALA SER ASN ILE PHE LEU THR GLY ALA PHE GLY SEQRES 20 L 273 THR ILE ALA SER GLY PRO PHE TRP THR ARG GLY TRP PRO SEQRES 21 L 273 GLU TRP TRP GLY TRP TRP LEU ASP ILE PRO PHE TRP SER SEQRES 1 M 323 ALA ASP TYR GLN THR ILE TYR THR GLN ILE GLN ALA ARG SEQRES 2 M 323 GLY PRO HIS ILE THR VAL SER GLY GLU TRP GLY ASP ASN SEQRES 3 M 323 ASP ARG VAL GLY LYS PRO PHE TYR SER TYR TRP LEU GLY SEQRES 4 M 323 LYS ILE GLY ASP ALA GLN ILE GLY PRO ILE TYR LEU GLY SEQRES 5 M 323 ALA SER GLY ILE ALA ALA PHE ALA PHE GLY SER THR ALA SEQRES 6 M 323 ILE LEU ILE ILE LEU PHE ASN MET ALA ALA GLU VAL HIS SEQRES 7 M 323 PHE ASP PRO LEU GLN PHE PHE ARG GLN PHE PHE TRP LEU SEQRES 8 M 323 GLY LEU TYR PRO PRO LYS ALA GLN TYR GLY MET GLY ILE SEQRES 9 M 323 PRO PRO LEU HIS ASP GLY GLY TRP TRP LEU MET ALA GLY SEQRES 10 M 323 LEU PHE MET THR LEU SER LEU GLY SER TRP TRP ILE ARG SEQRES 11 M 323 VAL TYR SER ARG ALA ARG ALA LEU GLY LEU GLY THR HIS SEQRES 12 M 323 ILE ALA TRP ASN PHE ALA ALA ALA ILE PHE PHE VAL LEU SEQRES 13 M 323 CYS ILE GLY CYS ILE HIS PRO THR LEU VAL GLY SER TRP SEQRES 14 M 323 SER GLU GLY VAL PRO PHE GLY ILE TRP PRO HIS ILE ASP SEQRES 15 M 323 TRP LEU THR ALA PHE SER ILE ARG TYR GLY ASN PHE TYR SEQRES 16 M 323 TYR CYS PRO TRP HIS GLY PHE SER ILE GLY PHE ALA TYR SEQRES 17 M 323 GLY CYS GLY LEU LEU PHE ALA ALA HIS GLY ALA THR ILE SEQRES 18 M 323 LEU ALA VAL ALA ARG PHE GLY GLY ASP ARG GLU ILE GLU SEQRES 19 M 323 GLN ILE THR ASP ARG GLY THR ALA VAL GLU ARG ALA ALA SEQRES 20 M 323 LEU PHE TRP ARG TRP THR ILE GLY PHE ASN ALA THR ILE SEQRES 21 M 323 GLU SER VAL HIS ARG TRP GLY TRP PHE PHE SER LEU MET SEQRES 22 M 323 VAL MET VAL SER ALA SER VAL GLY ILE LEU LEU THR GLY SEQRES 23 M 323 THR PHE VAL ASP ASN TRP TYR LEU TRP CYS VAL LYS HIS SEQRES 24 M 323 GLY ALA ALA PRO ASP TYR PRO ALA TYR LEU PRO ALA THR SEQRES 25 M 323 PRO ASP PRO ALA SER LEU PRO GLY ALA PRO LYS MODRES 3D38 FME H 1 MET N-FORMYLMETHIONINE HET FME H 1 10 HET SO4 C 808 5 HET SO4 C 809 5 HET SO4 C 810 5 HET SO4 C 811 5 HET SO4 C 813 5 HET SO4 C 814 5 HET SO4 C 815 5 HET HEC C 401 43 HET HEC C 402 43 HET HEC C 403 43 HET HEC C 404 43 HET HTO C 706 10 HET HTO C 707 10 HET SO4 H 803 5 HET SO4 H 806 5 HET SO4 H 807 5 HET SO4 H 812 5 HET LDA H 701 16 HET LDA H 703 16 HET HTO H 705 10 HET BCB L 400 66 HET BCB L 401 66 HET BPB L 402 65 HET UQ1 L 502 18 HET UQ1 L 503 18 HET LDA L 702 16 HET FE2 M 500 1 HET SO4 M 801 5 HET SO4 M 802 5 HET SO4 M 804 5 HET SO4 M 805 5 HET MQ9 M 501 58 HET BCB M 400 66 HET BCB M 401 66 HET BPB M 402 65 HET NS5 M 600 40 HET LDA M 704 16 HETNAM FME N-FORMYLMETHIONINE HETNAM SO4 SULFATE ION HETNAM HEC HEME C HETNAM HTO HEPTANE-1,2,3-TRIOL HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM BCB BACTERIOCHLOROPHYLL B HETNAM BPB BACTERIOPHEOPHYTIN B HETNAM UQ1 UBIQUINONE-1 HETNAM FE2 FE (II) ION HETNAM MQ9 MENAQUINONE-9 HETNAM NS5 15-CIS-1,2-DIHYDRONEUROSPORENE FORMUL 2 FME C6 H11 N O3 S FORMUL 5 SO4 15(O4 S 2-) FORMUL 12 HEC 4(C34 H34 FE N4 O4) FORMUL 16 HTO 3(C7 H16 O3) FORMUL 22 LDA 4(C14 H31 N O) FORMUL 25 BCB 4(C55 H72 MG N4 O6 2+) FORMUL 27 BPB 2(C55 H74 N4 O6) FORMUL 28 UQ1 2(C14 H18 O4) FORMUL 31 FE2 FE 2+ FORMUL 36 MQ9 C56 H80 O2 FORMUL 40 NS5 C40 H60 FORMUL 42 HOH *159(H2 O) HELIX 1 1 HIS C 24 ASP C 35 1 12 HELIX 2 2 ALA C 36 TYR C 38 5 3 HELIX 3 3 PRO C 51 TYR C 56 1 6 HELIX 4 4 THR C 66 SER C 82 1 17 HELIX 5 5 LYS C 101 TRP C 121 1 21 HELIX 6 6 THR C 131 ARG C 137 1 7 HELIX 7 7 THR C 168 SER C 170 5 3 HELIX 8 8 GLY C 171 LYS C 178 1 8 HELIX 9 9 ASP C 188 LEU C 194 1 7 HELIX 10 10 ARG C 216 ARG C 220 5 5 HELIX 11 11 LEU C 223 GLY C 241 1 19 HELIX 12 12 ASN C 243 CYS C 247 5 5 HELIX 13 13 ASN C 249 PHE C 253 5 5 HELIX 14 14 TRP C 256 SER C 260 5 5 HELIX 15 15 THR C 261 TYR C 281 1 21 HELIX 16 16 ALA C 283 SER C 288 5 6 HELIX 17 17 ASP C 304 GLN C 310 1 7 HELIX 18 18 LYS C 314 ALA C 319 5 6 HELIX 19 19 TYR C 325 GLY C 329 5 5 HELIX 20 20 ILE H 12 LEU H 30 1 19 HELIX 21 21 TYR H 31 ASP H 36 1 6 HELIX 22 22 ASP H 56 GLU H 61 1 6 HELIX 23 23 ASN H 106 ALA H 111 1 6 HELIX 24 24 VAL H 112 SER H 116 5 5 HELIX 25 25 GLY H 199 CYS H 201 5 3 HELIX 26 26 LEU H 214 VAL H 221 5 8 HELIX 27 27 THR H 231 ALA H 249 1 19 HELIX 28 28 THR H 250 ALA H 254 5 5 HELIX 29 29 GLU L 6 ARG L 10 5 5 HELIX 30 30 GLY L 18 ASP L 23 5 6 HELIX 31 31 VAL L 31 GLN L 55 1 25 HELIX 32 32 ASP L 70 GLY L 74 5 5 HELIX 33 33 PRO L 79 GLU L 82 5 4 HELIX 34 34 GLY L 83 LEU L 111 1 29 HELIX 35 35 TRP L 115 PHE L 121 1 7 HELIX 36 36 PHE L 121 VAL L 133 1 13 HELIX 37 37 VAL L 133 LEU L 139 1 7 HELIX 38 38 SER L 141 ALA L 145 5 5 HELIX 39 39 LEU L 151 GLN L 163 1 13 HELIX 40 40 TYR L 164 LEU L 165 5 2 HELIX 41 41 ASN L 166 TYR L 169 5 4 HELIX 42 42 ASN L 170 ASN L 199 1 30 HELIX 43 43 THR L 208 GLY L 221 1 14 HELIX 44 44 GLY L 225 SER L 251 1 27 HELIX 45 45 GLY L 258 TRP L 263 1 6 HELIX 46 46 TRP L 263 ASP L 268 1 6 HELIX 47 47 ILE L 269 SER L 273 5 5 HELIX 48 48 ASP M 2 TYR M 7 1 6 HELIX 49 49 TRP M 37 ILE M 41 5 5 HELIX 50 50 GLY M 52 VAL M 77 1 26 HELIX 51 51 ASP M 80 GLN M 87 1 8 HELIX 52 52 PHE M 88 LEU M 91 5 4 HELIX 53 53 PRO M 106 ASP M 109 5 4 HELIX 54 54 GLY M 110 LEU M 138 1 29 HELIX 55 55 THR M 142 CYS M 160 1 19 HELIX 56 56 CYS M 160 GLY M 167 1 8 HELIX 57 57 SER M 168 GLY M 172 5 5 HELIX 58 58 GLY M 176 TYR M 191 1 16 HELIX 59 59 ASN M 193 TYR M 196 5 4 HELIX 60 60 CYS M 197 VAL M 224 1 28 HELIX 61 61 ALA M 225 GLY M 228 5 4 HELIX 62 62 ARG M 231 ASP M 238 1 8 HELIX 63 63 GLY M 240 GLY M 255 1 16 HELIX 64 64 GLU M 261 THR M 285 1 25 HELIX 65 65 ASN M 291 HIS M 299 1 9 HELIX 66 66 ASP M 314 LEU M 318 5 5 SHEET 1 A 2 THR C 8 THR C 9 0 SHEET 2 A 2 VAL C 22 LEU C 23 -1 O LEU C 23 N THR C 8 SHEET 1 B 2 ALA H 5 LEU H 6 0 SHEET 2 B 2 LEU H 10 ASP H 11 -1 O LEU H 10 N LEU H 6 SHEET 1 C 2 LYS H 66 VAL H 69 0 SHEET 2 C 2 THR H 75 VAL H 78 -1 O VAL H 76 N PHE H 68 SHEET 1 D 2 LEU H 90 GLN H 92 0 SHEET 2 D 2 LEU H 101 PRO H 103 -1 O GLN H 102 N ALA H 91 SHEET 1 E 4 ILE H 134 PRO H 136 0 SHEET 2 E 4 GLU H 164 ASP H 174 -1 O VAL H 173 N VAL H 135 SHEET 3 E 4 TYR H 179 VAL H 187 -1 O GLU H 184 N ASP H 170 SHEET 4 E 4 ARG H 192 PRO H 197 -1 O ALA H 194 N LEU H 185 SHEET 1 F 5 ILE H 134 PRO H 136 0 SHEET 2 F 5 GLU H 164 ASP H 174 -1 O VAL H 173 N VAL H 135 SHEET 3 F 5 PRO H 156 VAL H 158 -1 N VAL H 157 O ALA H 165 SHEET 4 F 5 ILE H 208 VAL H 209 1 O ILE H 208 N VAL H 158 SHEET 5 F 5 ASP H 202 VAL H 203 -1 N ASP H 202 O VAL H 209 SHEET 1 G 2 SER H 144 ILE H 145 0 SHEET 2 G 2 ALA M 12 ARG M 13 -1 O ARG M 13 N SER H 144 SHEET 1 H 2 TRP L 25 VAL L 26 0 SHEET 2 H 2 TYR L 29 PHE L 30 -1 O TYR L 29 N VAL L 26 SHEET 1 I 2 ARG M 28 VAL M 29 0 SHEET 2 I 2 ILE M 49 TYR M 50 -1 O ILE M 49 N VAL M 29 LINK C FME H 1 N TYR H 2 1555 1555 1.33 LINK SD MET C 74 FE HEC C 401 1555 1555 2.25 LINK NE2 HIS C 91 FE HEC C 401 1555 1555 1.98 LINK SD MET C 110 FE HEC C 402 1555 1555 2.31 LINK NE2 HIS C 124 FE HEC C 404 1555 1555 1.93 LINK NE2 HIS C 136 FE HEC C 402 1555 1555 1.95 LINK SD MET C 233 FE HEC C 403 1555 1555 2.16 LINK NE2 HIS C 248 FE HEC C 403 1555 1555 1.91 LINK NE2 HIS C 309 FE HEC C 404 1555 1555 2.06 LINK NE2 HIS L 153 MG BCB L 401 1555 1555 2.26 LINK NE2 HIS L 173 MG BCB L 400 1555 1555 2.26 LINK NE2 HIS L 190 FE FE2 M 500 1555 1555 2.06 LINK NE2 HIS L 230 FE FE2 M 500 1555 1555 2.15 LINK NE2 HIS M 180 MG BCB M 400 1555 1555 2.25 LINK NE2 HIS M 200 MG BCB M 401 1555 1555 2.39 LINK NE2 HIS M 217 FE FE2 M 500 1555 1555 2.16 LINK OE1 GLU M 232 FE FE2 M 500 1555 1555 2.43 LINK OE2 GLU M 232 FE FE2 M 500 1555 1555 2.21 LINK NE2 HIS M 264 FE FE2 M 500 1555 1555 2.37 CISPEP 1 PRO C 5 PRO C 6 0 6.93 CISPEP 2 LEU C 152 PRO C 153 0 0.15 CISPEP 3 GLY C 329 PRO C 330 0 -2.35 CISPEP 4 TYR H 41 PRO H 42 0 14.99 CISPEP 5 VAL H 78 PRO H 79 0 3.03 CISPEP 6 GLY M 47 PRO M 48 0 -0.61 SITE 1 AC1 5 HIS L 190 HIS L 230 HIS M 217 GLU M 232 SITE 2 AC1 5 HIS M 264 SITE 1 AC2 3 ASN L 199 HIS M 143 ARG M 265 SITE 1 AC3 6 TRP M 23 TYR M 50 GLY M 52 ALA M 53 SITE 2 AC3 6 SER M 54 SER M 133 SITE 1 AC4 2 THR H 250 ARG H 253 SITE 1 AC5 3 LEU H 246 ALA M 1 ARG M 226 SITE 1 AC6 3 SER M 35 TYR M 36 TRP M 37 SITE 1 AC7 4 ARG H 37 TYR H 41 GLU H 61 ARG M 251 SITE 1 AC8 4 TYR H 117 GLU H 119 ARG H 233 LYS H 237 SITE 1 AC9 3 ALA C 319 SER C 320 ARG C 321 SITE 1 BC1 2 GLU C 112 ARG C 115 SITE 1 BC2 3 ASN C 196 LYS C 198 ARG C 199 SITE 1 BC3 6 HIS C 162 ARG C 165 ASP L 70 LYS L 72 SITE 2 BC3 6 TYR L 73 GLU L 82 SITE 1 BC4 2 HIS H 72 ASP H 129 SITE 1 BC5 3 THR C 161 HIS C 162 LYS L 72 SITE 1 BC6 2 LYS C 258 ARG C 293 SITE 1 BC7 3 PRO C 160 ARG C 165 PRO M 306 SITE 1 BC8 19 TYR C 56 LYS C 57 ASN C 58 LYS C 60 SITE 2 BC8 19 LEU C 62 PHE C 70 LEU C 71 MET C 74 SITE 3 BC8 19 THR C 75 ILE C 77 THR C 78 CYS C 87 SITE 4 BC8 19 CYS C 90 HIS C 91 LEU C 96 ALA C 97 SITE 5 BC8 19 TYR C 104 ALA C 107 ARG C 108 SITE 1 BC9 15 TYR C 89 TYR C 102 MET C 110 LEU C 111 SITE 2 BC9 15 MET C 113 THR C 114 THR C 131 CYS C 132 SITE 3 BC9 15 CYS C 135 HIS C 136 PRO C 140 LEU C 141 SITE 4 BC9 15 PRO C 142 ARG C 293 PRO C 301 SITE 1 CC1 18 ARG C 202 PHE C 230 MET C 233 MET C 234 SITE 2 CC1 18 ILE C 236 SER C 237 LEU C 240 ASN C 243 SITE 3 CC1 18 CYS C 244 CYS C 247 HIS C 248 PHE C 253 SITE 4 CC1 18 GLU C 254 ARG C 264 ALA C 267 TRP C 268 SITE 5 CC1 18 ARG C 272 ILE M 189 SITE 1 CC2 16 HIS C 124 THR C 128 ILE C 236 LEU C 240 SITE 2 CC2 16 PHE C 246 GLN C 263 ILE C 266 GLY C 270 SITE 3 CC2 16 ILE C 271 MET C 273 CYS C 305 CYS C 308 SITE 4 CC2 16 HIS C 309 THR C 313 LYS C 314 PRO C 315 SITE 1 CC3 18 PHE L 97 PRO L 124 MET L 127 PHE L 128 SITE 2 CC3 18 ASN L 158 PHE L 160 GLY L 161 TYR L 162 SITE 3 CC3 18 TRP L 167 HIS L 168 HIS L 173 SER L 176 SITE 4 CC3 18 ILE L 240 PHE L 241 GLY L 244 THR L 248 SITE 5 CC3 18 TYR M 195 TYR M 208 SITE 1 CC4 10 PHE L 128 PHE L 146 ILE L 150 HIS L 153 SITE 2 CC4 10 LEU L 154 GLY M 201 ILE M 204 GLY M 205 SITE 3 CC4 10 TYR M 208 GLY M 209 SITE 1 CC5 17 PHE L 41 ILE L 42 PHE L 97 TRP L 100 SITE 2 CC5 17 GLU L 104 PHE L 121 PRO L 124 TYR L 148 SITE 3 CC5 17 GLY L 149 ILE L 150 HIS L 153 ALA L 237 SITE 4 CC5 17 PHE L 241 TYR M 208 GLY M 211 LEU M 212 SITE 5 CC5 17 TRP M 250 SITE 1 CC6 11 TYR L 29 ILE L 39 PHE L 43 TRP L 100 SITE 2 CC6 11 HIS M 217 ALA M 246 TRP M 250 ILE M 254 SITE 3 CC6 11 ASN M 257 ALA M 258 TRP M 266 SITE 1 CC7 10 LEU L 189 HIS L 190 LEU L 193 GLU L 212 SITE 2 CC7 10 ASN L 213 PHE L 216 SER L 223 ILE L 224 SITE 3 CC7 10 GLY L 225 ILE L 229 SITE 1 CC8 4 TRP L 266 PHE M 85 PHE M 88 PHE M 89 SITE 1 CC9 10 HIS L 168 MET L 174 SER L 178 PHE L 181 SITE 2 CC9 10 MET L 185 ILE M 177 TRP M 178 HIS M 180 SITE 3 CC9 10 ILE M 181 LEU M 184 SITE 1 DC1 18 TYR L 162 PHE L 181 GLY M 62 LEU M 124 SITE 2 DC1 18 PHE M 154 LEU M 184 THR M 185 PHE M 187 SITE 3 DC1 18 SER M 188 PHE M 194 TYR M 195 HIS M 200 SITE 4 DC1 18 SER M 203 ILE M 204 TYR M 208 MET M 275 SITE 5 DC1 18 ALA M 278 ILE M 282 SITE 1 DC2 13 PHE L 181 ALA L 184 MET L 185 LEU L 189 SITE 2 DC2 13 ALA M 58 PHE M 59 SER M 123 LEU M 124 SITE 3 DC2 13 TRP M 127 ILE M 144 ASN M 147 PHE M 148 SITE 4 DC2 13 SER M 271 SITE 1 DC3 10 LEU M 70 LEU M 114 GLY M 117 THR M 121 SITE 2 DC3 10 GLY M 159 CYS M 160 PHE M 175 GLY M 176 SITE 3 DC3 10 ILE M 177 HIS M 180 SITE 1 DC4 2 ARG H 33 ASP H 56 SITE 1 DC5 6 TRP H 17 ASP L 60 TYR M 195 PRO M 198 SITE 2 DC5 6 TRP M 295 HIS M 299 SITE 1 DC6 5 LEU H 30 ARG H 34 TYR H 60 LEU H 62 SITE 2 DC6 5 TYR H 64 SITE 1 DC7 2 ALA M 53 LEU M 122 SITE 1 DC8 4 PRO H 71 HIS H 72 ASP H 125 ALA H 126 SITE 1 DC9 3 PRO C 205 GLN C 206 ARG C 221 SITE 1 EC1 3 GLU C 21 GLY C 241 THR C 313 CRYST1 241.171 241.171 113.391 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004146 0.002394 0.000000 0.00000 SCALE2 0.000000 0.004788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008819 0.00000