PDB Short entry for 5C1G HEADER TRANSFERASE 13-JUN-15 5C1G TITLE CRYSTAL STRUCTURE OF ABBA + UDP + DI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 64-354; COMPND 5 SYNONYM: FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, COMPND 6 FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, COMPND 7 GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- COMPND 8 ACETYLGALACTOSAMINYLTRANSFERASE,GLYCOPROTEIN-FUCOSYLGALACTOSIDE COMPND 9 ALPHA-GALACTOSYLTRANSFERASE,HISTO-BLOOD GROUP A TRANSFERASE,A COMPND 10 TRANSFERASE,HISTO-BLOOD GROUP B TRANSFERASE,B TRANSFERASE,NAGAT; COMPND 11 EC: 2.4.1.40,2.4.1.37; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE DEOXYINHIBITOR ABO(H) BLOOD-GROUP SYSTEM COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GAGNON REVDAT 6 27-SEP-23 5C1G 1 LINK REVDAT 5 08-JAN-20 5C1G 1 REMARK REVDAT 4 07-MAR-18 5C1G 1 JRNL REMARK REVDAT 3 18-NOV-15 5C1G 1 JRNL REVDAT 2 30-SEP-15 5C1G 1 JRNL REVDAT 1 23-SEP-15 5C1G 0 JRNL AUTH S.M.GAGNON,P.J.MELONCELLI,R.B.ZHENG,O.HAJI-GHASSEMI, JRNL AUTH 2 A.R.JOHAL,S.N.BORISOVA,T.L.LOWARY,S.V.EVANS JRNL TITL HIGH RESOLUTION STRUCTURES OF THE HUMAN ABO(H) BLOOD GROUP JRNL TITL 2 ENZYMES IN COMPLEX WITH DONOR ANALOGS REVEAL THAT THE JRNL TITL 3 ENZYMES UTILIZE MULTIPLE DONOR CONFORMATIONS TO BIND JRNL TITL 4 SUBSTRATES IN A STEPWISE MANNER. JRNL REF J.BIOL.CHEM. V. 290 27040 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26374898 JRNL DOI 10.1074/JBC.M115.682401 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 49902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2685 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.969 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2533 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2385 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3450 ; 1.528 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5430 ; 0.964 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.116 ;22.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;11.588 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2782 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 613 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 1.159 ; 1.829 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1180 ; 1.159 ; 1.827 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1479 ; 1.840 ; 2.731 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5C1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 19.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.280 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.44 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1LZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GROWN IN 1% POLYETHYLENE GLYCOL (PEG) REMARK 280 4000, 4.5-5% 2-METHYL-2,4-PENTANEDIOL (MPD), 100 MM AMMONIUM REMARK 280 SULFATE, 70 MM SODIUM CHLORIDE, 50 MM N-[-ACETAMIDO]-2- REMARK 280 IMINODIACETIC ACID (ADA), 30 MM SODIUM ACETATE, 5 MM MANGANESE REMARK 280 CHLORIDE. GROWN 5-10 DAYS., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.68000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.25500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.65000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.68000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.25500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.65000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.68000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 58 REMARK 465 ILE A 59 REMARK 465 ALA A 350 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 465 GLU A 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 PHE A 195 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 ASN A 347 CG OD1 ND2 REMARK 470 GLN A 349 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 581 O HOH A 667 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 328 CA - C - O ANGL. DEV. = 15.7 DEGREES REMARK 500 GLN A 328 CA - C - O ANGL. DEV. = 15.2 DEGREES REMARK 500 GLN A 328 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 GLN A 328 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -127.12 55.10 REMARK 500 SER A 193 -75.40 -79.57 REMARK 500 THR A 226 165.48 179.43 REMARK 500 THR A 245 46.03 -88.51 REMARK 500 HIS A 301 -129.93 55.73 REMARK 500 ASN A 347 76.13 38.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 718 DISTANCE = 5.95 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DA8 A 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 211 OD2 REMARK 620 2 ASP A 213 OD1 99.9 REMARK 620 3 ASP A 213 OD2 154.0 54.1 REMARK 620 4 GDU A 403 O2B 105.8 151.2 99.5 REMARK 620 5 GDU A 403 O2A 94.4 81.9 82.9 83.4 REMARK 620 6 HOH A 674 O 90.3 97.9 93.1 94.7 175.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DA8 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDU A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BXC RELATED DB: PDB REMARK 900 RELATED ID: 5C1H RELATED DB: PDB REMARK 900 RELATED ID: 5C1L RELATED DB: PDB REMARK 900 RELATED ID: 5C36 RELATED DB: PDB REMARK 900 RELATED ID: 5C38 RELATED DB: PDB REMARK 900 RELATED ID: 5C3A RELATED DB: PDB REMARK 900 RELATED ID: 5C3B RELATED DB: PDB REMARK 900 RELATED ID: 5C3D RELATED DB: PDB REMARK 900 RELATED ID: 5C47 RELATED DB: PDB REMARK 900 RELATED ID: 5C48 RELATED DB: PDB REMARK 900 RELATED ID: 5C49 RELATED DB: PDB REMARK 900 RELATED ID: 5C4B RELATED DB: PDB REMARK 900 RELATED ID: 5C4C RELATED DB: PDB REMARK 900 RELATED ID: 5C4D RELATED DB: PDB REMARK 900 RELATED ID: 5C4E RELATED DB: PDB REMARK 900 RELATED ID: 5C4F RELATED DB: PDB REMARK 900 RELATED ID: 5C8R RELATED DB: PDB DBREF 5C1G A 64 354 UNP P16442 BGAT_HUMAN 64 354 SEQADV 5C1G ALA A 58 UNP P16442 EXPRESSION TAG SEQADV 5C1G ILE A 59 UNP P16442 EXPRESSION TAG SEQADV 5C1G GLY A 60 UNP P16442 EXPRESSION TAG SEQADV 5C1G GLU A 61 UNP P16442 EXPRESSION TAG SEQADV 5C1G PHE A 62 UNP P16442 EXPRESSION TAG SEQADV 5C1G MET A 63 UNP P16442 EXPRESSION TAG SEQADV 5C1G SER A 235 UNP P16442 GLY 235 ENGINEERED MUTATION SEQADV 5C1G MET A 266 UNP P16442 LEU 266 ENGINEERED MUTATION SEQADV 5C1G GLU A 355 UNP P16442 EXPRESSION TAG SEQRES 1 A 298 ALA ILE GLY GLU PHE MET VAL SER LEU PRO ARG MET VAL SEQRES 2 A 298 TYR PRO GLN PRO LYS VAL LEU THR PRO CYS ARG LYS ASP SEQRES 3 A 298 VAL LEU VAL VAL THR PRO TRP LEU ALA PRO ILE VAL TRP SEQRES 4 A 298 GLU GLY THR PHE ASN ILE ASP ILE LEU ASN GLU GLN PHE SEQRES 5 A 298 ARG LEU GLN ASN THR THR ILE GLY LEU THR VAL PHE ALA SEQRES 6 A 298 ILE LYS LYS TYR VAL ALA PHE LEU LYS LEU PHE LEU GLU SEQRES 7 A 298 THR ALA GLU LYS HIS PHE MET VAL GLY HIS ARG VAL HIS SEQRES 8 A 298 TYR TYR VAL PHE THR ASP GLN PRO ALA ALA VAL PRO ARG SEQRES 9 A 298 VAL THR LEU GLY THR GLY ARG GLN LEU SER VAL LEU GLU SEQRES 10 A 298 VAL ARG ALA TYR LYS ARG TRP GLN ASP VAL SER MET ARG SEQRES 11 A 298 ARG MET GLU MET ILE SER ASP PHE CYS GLU ARG ARG PHE SEQRES 12 A 298 LEU SER GLU VAL ASP TYR LEU VAL CYS VAL ASP VAL ASP SEQRES 13 A 298 MET GLU PHE ARG ASP HIS VAL GLY VAL GLU ILE LEU THR SEQRES 14 A 298 PRO LEU PHE GLY THR LEU HIS PRO SER PHE TYR GLY SER SEQRES 15 A 298 SER ARG GLU ALA PHE THR TYR GLU ARG ARG PRO GLN SER SEQRES 16 A 298 GLN ALA TYR ILE PRO LYS ASP GLU GLY ASP PHE TYR TYR SEQRES 17 A 298 MET GLY GLY PHE PHE GLY GLY SER VAL GLN GLU VAL GLN SEQRES 18 A 298 ARG LEU THR ARG ALA CYS HIS GLN ALA MET MET VAL ASP SEQRES 19 A 298 GLN ALA ASN GLY ILE GLU ALA VAL TRP HIS ASP GLU SER SEQRES 20 A 298 HIS LEU ASN LYS TYR LEU LEU ARG HIS LYS PRO THR LYS SEQRES 21 A 298 VAL LEU SER PRO GLU TYR LEU TRP ASP GLN GLN LEU LEU SEQRES 22 A 298 GLY TRP PRO ALA VAL LEU ARG LYS LEU ARG PHE THR ALA SEQRES 23 A 298 VAL PRO LYS ASN HIS GLN ALA VAL ARG ASN PRO GLU HET MN A 401 1 HET DA8 A 402 27 HET GDU A 403 36 HET PG0 A 404 8 HETNAM MN MANGANESE (II) ION HETNAM DA8 OCTYL 3-DEOXY-2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)- HETNAM 2 DA8 BETA-D-XYLO-HEXOPYRANOSIDE HETNAM GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN DA8 ALPHA-L-FUCP-(1,2)-BETA-D-3-DEOXY-GALP-O(CH2)7CH3 HETSYN GDU UDP-D-GALACTOPYRANOSE HETSYN PG0 PEG 6000 FORMUL 2 MN MN 2+ FORMUL 3 DA8 C20 H38 O9 FORMUL 4 GDU C15 H24 N2 O17 P2 FORMUL 5 PG0 C5 H12 O3 FORMUL 6 HOH *218(H2 O) HELIX 1 AA1 ASN A 101 GLN A 112 1 12 HELIX 2 AA2 ILE A 123 ALA A 128 5 6 HELIX 3 AA3 PHE A 129 PHE A 141 1 13 HELIX 4 AA4 GLN A 155 VAL A 159 5 5 HELIX 5 AA5 ARG A 180 ARG A 187 1 8 HELIX 6 AA6 ARG A 187 ASP A 194 1 8 HELIX 7 AA7 CYS A 196 VAL A 204 1 9 HELIX 8 AA8 GLY A 221 LEU A 225 5 5 HELIX 9 AA9 SER A 240 PHE A 244 5 5 HELIX 10 AB1 VAL A 274 ASN A 294 1 21 HELIX 11 AB2 HIS A 301 HIS A 313 1 13 HELIX 12 AB3 PRO A 321 LEU A 324 5 4 HELIX 13 AB4 ASP A 326 GLY A 331 1 6 SHEET 1 AA1 8 ILE A 94 VAL A 95 0 SHEET 2 AA1 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 AA1 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 AA1 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 AA1 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 AA1 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 AA1 8 ARG A 146 THR A 153 1 O TYR A 150 N LEU A 118 SHEET 8 AA1 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 AA2 2 MET A 214 PHE A 216 0 SHEET 2 AA2 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK OD2 ASP A 211 MN MN A 401 1555 1555 2.20 LINK OD1 ASP A 213 MN MN A 401 1555 1555 2.30 LINK OD2 ASP A 213 MN MN A 401 1555 1555 2.44 LINK MN MN A 401 O2B GDU A 403 1555 1555 2.05 LINK MN MN A 401 O2A GDU A 403 1555 1555 2.15 LINK MN MN A 401 O HOH A 674 1555 1555 2.18 SITE 1 AC1 4 ASP A 211 ASP A 213 GDU A 403 HOH A 674 SITE 1 AC2 17 HIS A 233 SER A 235 PHE A 236 THR A 245 SITE 2 AC2 17 TYR A 264 MET A 266 TRP A 300 GLU A 303 SITE 3 AC2 17 ASP A 326 LEU A 329 LYS A 346 HIS A 348 SITE 4 AC2 17 GDU A 403 HOH A 510 HOH A 610 HOH A 616 SITE 5 AC2 17 HOH A 665 SITE 1 AC3 24 PHE A 121 ALA A 122 ILE A 123 TYR A 126 SITE 2 AC3 24 TRP A 181 VAL A 184 SER A 185 ARG A 188 SITE 3 AC3 24 ASP A 211 VAL A 212 ASP A 213 MET A 266 SITE 4 AC3 24 GLY A 267 GLY A 268 TRP A 300 HIS A 301 SITE 5 AC3 24 ASP A 302 GLU A 303 LYS A 346 MN A 401 SITE 6 AC3 24 DA8 A 402 HOH A 521 HOH A 615 HOH A 661 SITE 1 AC4 3 HIS A 140 HIS A 219 HOH A 502 CRYST1 52.510 149.300 79.360 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012601 0.00000