PDB Short entry for 6VTA HEADER TRANSFERASE 12-FEB-20 6VTA TITLE AMINOGLYCOSIDE N-2'-ACETYLTRANSFERASE-IA [AAC(2')-IA] IN COMPLEX WITH TITLE 2 AMIKACIN AND ACETYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AAC(2')-IA; COMPND 5 EC: 2.3.1.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA STUARTII; SOURCE 3 ORGANISM_TAXID: 588; SOURCE 4 GENE: AAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACETYLTRANSFERASE, GNAT SUPERFAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.BASSENDEN,A.M.BERGHUIS REVDAT 3 11-OCT-23 6VTA 1 REMARK REVDAT 2 14-JUL-21 6VTA 1 JRNL REVDAT 1 02-JUN-21 6VTA 0 JRNL AUTH A.V.BASSENDEN,L.DUMALO,J.PARK,J.BLANCHET,K.MAITI,D.P.ARYA, JRNL AUTH 2 A.M.BERGHUIS JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSES OF RESISTANCE TO JRNL TITL 2 NEXT-GENERATION AMINOGLYCOSIDES CONFERRED BY AAC(2') JRNL TITL 3 ENZYMES. JRNL REF SCI REP V. 11 11614 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34078922 JRNL DOI 10.1038/S41598-021-89446-3 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 76602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4700 - 4.2500 1.00 2811 133 0.1255 0.1405 REMARK 3 2 4.2400 - 3.3700 1.00 2785 132 0.1083 0.1281 REMARK 3 3 3.3700 - 2.9500 1.00 2730 151 0.1277 0.1502 REMARK 3 4 2.9500 - 2.6800 1.00 2699 166 0.1403 0.1697 REMARK 3 5 2.6800 - 2.4800 1.00 2753 141 0.1363 0.1724 REMARK 3 6 2.4800 - 2.3400 1.00 2725 129 0.1238 0.1521 REMARK 3 7 2.3400 - 2.2200 1.00 2707 136 0.1208 0.1740 REMARK 3 8 2.2200 - 2.1200 1.00 2724 116 0.1137 0.1572 REMARK 3 9 2.1200 - 2.0400 1.00 2691 158 0.1102 0.1382 REMARK 3 10 2.0400 - 1.9700 1.00 2730 134 0.1148 0.1896 REMARK 3 11 1.9700 - 1.9100 1.00 2726 127 0.1157 0.1643 REMARK 3 12 1.9100 - 1.8600 1.00 2714 149 0.1215 0.1616 REMARK 3 13 1.8600 - 1.8100 1.00 2686 145 0.1242 0.1938 REMARK 3 14 1.8100 - 1.7600 1.00 2700 140 0.1255 0.1896 REMARK 3 15 1.7600 - 1.7200 1.00 2690 135 0.1285 0.1833 REMARK 3 16 1.7200 - 1.6900 1.00 2699 149 0.1401 0.2187 REMARK 3 17 1.6900 - 1.6500 1.00 2701 143 0.1499 0.2253 REMARK 3 18 1.6500 - 1.6200 1.00 2655 146 0.1576 0.2137 REMARK 3 19 1.6200 - 1.5900 0.99 2704 147 0.1747 0.2422 REMARK 3 20 1.5900 - 1.5700 0.99 2696 112 0.1887 0.2257 REMARK 3 21 1.5700 - 1.5400 0.99 2686 131 0.1996 0.2660 REMARK 3 22 1.5400 - 1.5200 0.99 2673 148 0.2081 0.2671 REMARK 3 23 1.5200 - 1.4900 0.99 2643 160 0.2234 0.3092 REMARK 3 24 1.4900 - 1.4700 0.99 2681 137 0.2434 0.3282 REMARK 3 25 1.4700 - 1.4500 0.98 2645 145 0.2582 0.3152 REMARK 3 26 1.4500 - 1.4300 0.98 2632 170 0.2855 0.3146 REMARK 3 27 1.4300 - 1.4200 0.93 2494 142 0.3171 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3450 REMARK 3 ANGLE : 0.940 4730 REMARK 3 CHIRALITY : 0.075 500 REMARK 3 PLANARITY : 0.003 611 REMARK 3 DIHEDRAL : 25.062 494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 27.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA3CIT, NACL, TRIS, AMIKACIN, ACETYL REMARK 280 COA, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.68350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.46400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.68350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.46400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 497 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 LYS A 54 CD CE NZ REMARK 470 LYS A 139 NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS B 121 CD CE NZ REMARK 470 LYS B 157 CE NZ REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 140 O HOH A 401 2.05 REMARK 500 O HOH A 401 O HOH A 634 2.16 REMARK 500 O HOH B 574 O HOH B 612 2.17 REMARK 500 O HOH B 613 O HOH B 619 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 401 O HOH B 612 4745 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 -115.98 55.26 REMARK 500 ASP A 69 -117.26 52.01 REMARK 500 ALA A 158 -72.42 -70.37 REMARK 500 PHE B 33 113.69 -163.11 REMARK 500 GLN B 52 -102.86 58.50 REMARK 500 ASP B 69 -116.25 49.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 659 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 620 DISTANCE = 6.54 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKN B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VOU RELATED DB: PDB REMARK 900 6VOU CONTAINS THE SAME PROTEIN COMPLEXED WITH ACETYLATED PLAZOMICIN REMARK 900 AND COA REMARK 900 RELATED ID: 6VR2 RELATED DB: PDB REMARK 900 6VR2 CONTAINS THE SAME PROTEIN COMPLEXED WITH ACETYLATED TOBRAMYCIN REMARK 900 AND COA REMARK 900 RELATED ID: 6VR3 RELATED DB: PDB REMARK 900 6VR3 CONTAINS THE SAME PROTEIN COMPLEXED WITH ACETYLATED NETILMICIN REMARK 900 AND COA DBREF 6VTA A 1 178 UNP Q52424 AAC2_PROST 1 178 DBREF 6VTA B 1 178 UNP Q52424 AAC2_PROST 1 178 SEQADV 6VTA GLY A -2 UNP Q52424 EXPRESSION TAG SEQADV 6VTA SER A -1 UNP Q52424 EXPRESSION TAG SEQADV 6VTA HIS A 0 UNP Q52424 EXPRESSION TAG SEQADV 6VTA GLY B -2 UNP Q52424 EXPRESSION TAG SEQADV 6VTA SER B -1 UNP Q52424 EXPRESSION TAG SEQADV 6VTA HIS B 0 UNP Q52424 EXPRESSION TAG SEQRES 1 A 181 GLY SER HIS MET GLY ILE GLU TYR ARG SER LEU HIS THR SEQRES 2 A 181 SER GLN LEU THR LEU SER GLU LYS GLU ALA LEU TYR ASP SEQRES 3 A 181 LEU LEU ILE GLU GLY PHE GLU GLY ASP PHE SER HIS ASP SEQRES 4 A 181 ASP PHE ALA HIS THR LEU GLY GLY MET HIS VAL MET ALA SEQRES 5 A 181 PHE ASP GLN GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE SEQRES 6 A 181 GLN ARG HIS MET ALA LEU ASP ASN THR PRO ILE SER VAL SEQRES 7 A 181 GLY TYR VAL GLU ALA MET VAL VAL GLU GLN SER TYR ARG SEQRES 8 A 181 ARG GLN GLY ILE GLY ARG GLN LEU MET LEU GLN THR ASN SEQRES 9 A 181 LYS ILE ILE ALA SER CYS TYR GLN LEU GLY LEU LEU SER SEQRES 10 A 181 ALA SER ASP ASP GLY GLN LYS LEU TYR HIS SER VAL GLY SEQRES 11 A 181 TRP GLN ILE TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN SEQRES 12 A 181 GLY SER TYR ILE ARG SER ILE GLU GLU GLU GLY GLY VAL SEQRES 13 A 181 MET GLY TRP LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SEQRES 14 A 181 SER LEU TYR CYS ASP PHE ARG GLY GLY ASP GLN TRP SEQRES 1 B 181 GLY SER HIS MET GLY ILE GLU TYR ARG SER LEU HIS THR SEQRES 2 B 181 SER GLN LEU THR LEU SER GLU LYS GLU ALA LEU TYR ASP SEQRES 3 B 181 LEU LEU ILE GLU GLY PHE GLU GLY ASP PHE SER HIS ASP SEQRES 4 B 181 ASP PHE ALA HIS THR LEU GLY GLY MET HIS VAL MET ALA SEQRES 5 B 181 PHE ASP GLN GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE SEQRES 6 B 181 GLN ARG HIS MET ALA LEU ASP ASN THR PRO ILE SER VAL SEQRES 7 B 181 GLY TYR VAL GLU ALA MET VAL VAL GLU GLN SER TYR ARG SEQRES 8 B 181 ARG GLN GLY ILE GLY ARG GLN LEU MET LEU GLN THR ASN SEQRES 9 B 181 LYS ILE ILE ALA SER CYS TYR GLN LEU GLY LEU LEU SER SEQRES 10 B 181 ALA SER ASP ASP GLY GLN LYS LEU TYR HIS SER VAL GLY SEQRES 11 B 181 TRP GLN ILE TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN SEQRES 12 B 181 GLY SER TYR ILE ARG SER ILE GLU GLU GLU GLY GLY VAL SEQRES 13 B 181 MET GLY TRP LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SEQRES 14 B 181 SER LEU TYR CYS ASP PHE ARG GLY GLY ASP GLN TRP HET ACO A 301 51 HET AKN A 302 40 HET ACO B 301 51 HET AKN B 302 40 HETNAM ACO ACETYL COENZYME *A HETNAM AKN (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6- HETNAM 2 AKN (AMINOMETHYL)-3,4,5-TRIS(OXIDANYL)OXAN-2-YL]OXY-5- HETNAM 3 AKN AZANYL-2-[(2S,3R,4S,5S ,6R)-4-AZANYL-6- HETNAM 4 AKN (HYDROXYMETHYL)-3,5-BIS(OXIDANYL)OXAN-2-YL]OXY-3- HETNAM 5 AKN OXIDANYL-CYCLOHEXYL]-4-AZANYL-2-OXIDANYL-BUTANAMIDE HETSYN AKN AMIKACIN FORMUL 3 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 4 AKN 2(C22 H43 N5 O13) FORMUL 7 HOH *480(H2 O) HELIX 1 AA1 SER A 11 LEU A 13 5 3 HELIX 2 AA2 THR A 14 PHE A 29 1 16 HELIX 3 AA3 SER A 34 THR A 41 1 8 HELIX 4 AA4 GLN A 85 ARG A 88 5 4 HELIX 5 AA5 GLY A 91 TYR A 108 1 18 HELIX 6 AA6 SER A 116 VAL A 126 1 11 HELIX 7 AA7 ILE A 147 GLU A 150 5 4 HELIX 8 AA8 SER B 11 LEU B 13 5 3 HELIX 9 AA9 THR B 14 PHE B 29 1 16 HELIX 10 AB1 SER B 34 THR B 41 1 8 HELIX 11 AB2 GLN B 85 ARG B 88 5 4 HELIX 12 AB3 GLY B 91 TYR B 108 1 18 HELIX 13 AB4 SER B 116 VAL B 126 1 11 HELIX 14 AB5 ILE B 147 GLU B 150 5 4 SHEET 1 AA1 8 SER A -1 HIS A 0 0 SHEET 2 AA1 8 ILE A 3 HIS A 9 -1 O ILE A 3 N HIS A 0 SHEET 3 AA1 8 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 4 AA1 8 LYS A 54 LEU A 68 -1 O VAL A 56 N ALA A 49 SHEET 5 AA1 8 THR A 71 VAL A 83 -1 O TYR A 77 N ILE A 62 SHEET 6 AA1 8 LEU A 110 SER A 114 1 O LEU A 112 N VAL A 78 SHEET 7 AA1 8 VAL A 153 TRP A 156 -1 O TRP A 156 N GLY A 111 SHEET 8 AA1 8 GLN A 129 ILE A 130 -1 N GLN A 129 O GLY A 155 SHEET 1 AA2 7 SER A -1 HIS A 0 0 SHEET 2 AA2 7 ILE A 3 HIS A 9 -1 O ILE A 3 N HIS A 0 SHEET 3 AA2 7 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 4 AA2 7 LYS A 54 LEU A 68 -1 O VAL A 56 N ALA A 49 SHEET 5 AA2 7 LEU A 168 TYR A 169 -1 O TYR A 169 N ALA A 67 SHEET 6 AA2 7 LEU A 135 LYS A 139 1 N PHE A 136 O LEU A 168 SHEET 7 AA2 7 SER A 142 ARG A 145 -1 O SER A 142 N LYS A 139 SHEET 1 AA3 8 SER B -1 HIS B 0 0 SHEET 2 AA3 8 ILE B 3 HIS B 9 -1 O ILE B 3 N HIS B 0 SHEET 3 AA3 8 MET B 45 ASP B 51 -1 O PHE B 50 N GLU B 4 SHEET 4 AA3 8 LYS B 54 LEU B 68 -1 O VAL B 56 N ALA B 49 SHEET 5 AA3 8 THR B 71 VAL B 83 -1 O THR B 71 N LEU B 68 SHEET 6 AA3 8 LEU B 110 SER B 114 1 O LEU B 110 N GLY B 76 SHEET 7 AA3 8 VAL B 153 TRP B 156 -1 O MET B 154 N LEU B 113 SHEET 8 AA3 8 GLN B 129 ILE B 130 -1 N GLN B 129 O GLY B 155 SHEET 1 AA4 7 SER B -1 HIS B 0 0 SHEET 2 AA4 7 ILE B 3 HIS B 9 -1 O ILE B 3 N HIS B 0 SHEET 3 AA4 7 MET B 45 ASP B 51 -1 O PHE B 50 N GLU B 4 SHEET 4 AA4 7 LYS B 54 LEU B 68 -1 O VAL B 56 N ALA B 49 SHEET 5 AA4 7 LEU B 168 TYR B 169 -1 O TYR B 169 N ALA B 67 SHEET 6 AA4 7 LEU B 135 LYS B 139 1 N PHE B 136 O LEU B 168 SHEET 7 AA4 7 SER B 142 ARG B 145 -1 O SER B 142 N LYS B 139 SITE 1 AC1 28 GLY A 28 HIS A 35 VAL A 78 ALA A 80 SITE 2 AC1 28 MET A 81 VAL A 82 VAL A 83 ARG A 88 SITE 3 AC1 28 ARG A 89 GLN A 90 GLY A 91 ILE A 92 SITE 4 AC1 28 GLY A 93 ARG A 94 SER A 114 SER A 116 SITE 5 AC1 28 ASP A 118 LYS A 121 LEU A 122 TYR A 123 SITE 6 AC1 28 AKN A 302 HOH A 426 HOH A 435 HOH A 461 SITE 7 AC1 28 HOH A 473 HOH A 488 HOH A 526 HOH A 552 SITE 1 AC2 27 PHE A 29 ASP A 32 ASP A 37 GLU A 79 SITE 2 AC2 27 ALA A 80 SER A 114 ALA A 115 SER A 116 SITE 3 AC2 27 ASP A 117 GLU A 148 GLU A 149 TRP A 178 SITE 4 AC2 27 ACO A 301 HOH A 419 HOH A 421 HOH A 433 SITE 5 AC2 27 HOH A 439 HOH A 467 HOH A 471 HOH A 475 SITE 6 AC2 27 HOH A 479 HOH A 485 HOH A 494 HOH A 529 SITE 7 AC2 27 HOH A 530 HOH A 547 HOH A 562 SITE 1 AC3 28 GLY B 28 PHE B 29 VAL B 78 ALA B 80 SITE 2 AC3 28 MET B 81 VAL B 82 VAL B 83 ARG B 88 SITE 3 AC3 28 ARG B 89 GLN B 90 GLY B 91 ILE B 92 SITE 4 AC3 28 GLY B 93 ARG B 94 SER B 114 SER B 116 SITE 5 AC3 28 ASP B 118 LEU B 122 TYR B 123 AKN B 302 SITE 6 AC3 28 HOH B 407 HOH B 408 HOH B 414 HOH B 419 SITE 7 AC3 28 HOH B 424 HOH B 436 HOH B 441 HOH B 482 SITE 1 AC4 26 PHE B 29 ASP B 32 PHE B 33 ASP B 37 SITE 2 AC4 26 GLU B 79 ALA B 80 SER B 114 ALA B 115 SITE 3 AC4 26 SER B 116 ASP B 117 GLU B 148 TRP B 178 SITE 4 AC4 26 ACO B 301 HOH B 418 HOH B 423 HOH B 433 SITE 5 AC4 26 HOH B 437 HOH B 448 HOH B 458 HOH B 459 SITE 6 AC4 26 HOH B 466 HOH B 476 HOH B 500 HOH B 536 SITE 7 AC4 26 HOH B 538 HOH B 558 CRYST1 93.367 58.928 83.203 90.00 115.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010710 0.000000 0.005212 0.00000 SCALE2 0.000000 0.016970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013366 0.00000