EMBOSS package for Sequence Analysis
open in new windowComplete list of EMBOSS programs
Web access to EMBOSS open in new windowhere
For list of the BLAST programs open in new windowclick here
open in new windowComplete list of FASTA programs
for more details about t_coffee various programs open in new windowclick here
To run on sure:
% muscle and press 'Enter'
open in new windowComplete list of available programs
HMMER ver 3b1 userguide in pdf is available PDF open in new windowHere