198D A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION date
authors Dautant, A., Estaintot, B.Langlois.D., Gallois, B., Brown, T., Hunter, W.N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.97
ligand DM5, SPM enzyme
Primary referenceA trigonal form of the idarubicin:d(CGATCG) complex; crystal and molecular structure at 2.0 A resolution., Dautant A, Langlois d'Estaintot B, Gallois B, Brown T, Hunter WN, Nucleic Acids Res 1995 May 25;23(10):1710-6. PMID:7784175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (198d.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (198d.pdb2.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 198D
  • CSU: Contacts of Structural Units for 198D
  • Likely Quarternary Molecular Structure file(s) for 198D
  • Retrieve 198D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 198D from S2C, [Save to disk]
    • View 198D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 198D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 198D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [198d] [198d_B] [198d_D] [198d_C] [198d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 198D
  • Community annotation for 198D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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