1DJQ	Oxidoreductase	date	Dec 03, 1999
title	Structural And Biochemical Characterization Of Recombinant C Of Trimethylamine Dehydrogenase From Methylophilus Methylot (Sp. W3a1)
authors	P.Trickey, J.Basran, L.Y.Lian, Z.W.Chen, J.D.Barton, M.J.Sutcli N.S.Scrutton, F.S.Mathews
compound		source
Molecule: Trimethylamine Dehydrogenase Chain: A, B Ec: 1.5.99.7 Engineered: Yes Mutation: Yes		Organism_scientific: Methylophilus Methylotrophus Organism_taxid: 2327 Strain: W3a1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M13mp18 Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 1 21 1	R_factor 0.139 R_Free 0.187
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.090 72.000 83.760 90.00 97.77 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ADP, FMN, SF4	enzyme	Oxidoreductase E.C.1.5.99.7 BRENDA
related structures	by homologous chain: 1DJN, 2TMD
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and biochemical characterization of recombinant wild type and a C30A mutant of trimethylamine dehydrogenase from methylophilus methylotrophus (sp. W(3)A(1))., Trickey P, Basran J, Lian LY, Chen Z, Barton JD, Sutcliffe MJ, Scrutton NS, Mathews FS, Biochemistry 2000 Jul 4;39(26):7678-88. PMID:10869173

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (1djq.pdb1.gz) 242 Kb LPC: Ligand-Protein Contacts for 1DJQ CSU: Contacts of Structural Units for 1DJQ Likely Quarternary Molecular Structure file(s) for 1DJQ Structure Factors (596 Kb) Retrieve 1DJQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DJQ from S2C, [Save to disk] Re-refined 1djq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DJQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DJQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DJQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1djqa1, region A:1-340 [Jmol] [rasmolscript] [script source]     - Domain d1djqa3, region A:341-489,A:646-729 [Jmol] [rasmolscript] [script source]     - Domain d1djqa2, region A:490-645 [Jmol] [rasmolscript] [script source]     - Domain d1djqb1, region B:1-340 [Jmol] [rasmolscript] [script source]     - Domain d1djqb3, region B:341-489,B:646-729 [Jmol] [rasmolscript] [script source]     - Domain d1djqb2, region B:490-645 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1djq_A] [1djq] [1djq_B] SWISS-PROT database: [P16099] Domain organization of [DHTM_METME] by SWISSPFAM

Other resources with information on 1DJQ

Community annotation for 1DJQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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