1JAW	Proline Peptidase	date	Dec 22, 1997
title	Aminopeptidase P From E. Coli Low Ph Form
authors	M.C.J.Wilce, C.S.Bond, P.E.Lilley, N.E.Dixon, H.C.Freeman, J.M.Gu
compound		source
Molecule: Aminopeptidase P Chain: A Synonym: Ampp Ec: 3.4.11.9 Other_details: Active Site 2 Manganese		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: An1459ppl670 Cellular_location: Cytoplasm
symmetry	Space Group: I 41 2 2	R_factor 0.182 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 139.710 139.710 230.870 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	ACT, MN	enzyme	Hydrolase E.C.3.4.11.9 BRENDA
related structures	by homologous chain: 1M35
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and mechanism of a proline-specific aminopeptidase from Escherichia coli., Wilce MC, Bond CS, Dixon NE, Freeman HC, Guss JM, Lilley PE, Wilce JA, Proc Natl Acad Sci U S A 1998 Mar 31;95(7):3472-7. PMID:9520390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (1jaw.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 1JAW CSU: Contacts of Structural Units for 1JAW Likely Quarternary Molecular Structure file(s) for 1JAW Structure Factors (247 Kb) Retrieve 1JAW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JAW from S2C, [Save to disk] Re-refined 1jaw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JAW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JAW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JAW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jaw_1, region 1-176 [Jmol] [rasmolscript] [script source]     - Domain d1jaw_2, region 177-440 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jaw_A] [1jaw] SWISS-PROT database: [P15034] Domain organization of [AMPP_ECOLI] by SWISSPFAM Domain found in 1JAW: [AMP_N ] by SMART

Other resources with information on 1JAW

Community annotation for 1JAW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1JAW from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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