1M35	Hydrolase	date	Jun 27, 2002
title	Aminopeptidase P From Escherichia Coli
authors	S.C.Graham, M.Lee, H.C.Freeman, J.M.Guss
compound		source
Molecule: Aminopeptidase P Chain: A, B, C, D, E, F Synonym: Ampp, Aminoacylproline Aminopeptidase, X-Pro Amino Ec: 3.4.11.9 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Pepp Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: An1459 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppl670
symmetry	Space Group: C 2 2 21	R_factor 0.195 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 209.047 313.963 162.034 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MN	enzyme	Hydrolase E.C.3.4.11.9 BRENDA
related structures	by homologous chain: 1A16, 1JAW
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	An orthorhombic form of Escherichia coli aminopeptidase P at 2.4 A resolution., Graham SC, Lee M, Freeman HC, Guss JM, Acta Crystallogr D Biol Crystallogr 2003 May;59(Pt 5):897-902. PMID:12777807

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk] Biological Unit Coordinates (1m35.pdb1.gz) 281 Kb Biological Unit Coordinates (1m35.pdb2.gz) 283 Kb LPC: Ligand-Protein Contacts for 1M35 CSU: Contacts of Structural Units for 1M35 Likely Quarternary Molecular Structure file(s) for 1M35 Structure Factors (1763 Kb) Retrieve 1M35 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M35 from S2C, [Save to disk] Re-refined 1m35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M35 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M35

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M35, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m35a1, region A:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35a2, region A:177-440 [Jmol] [rasmolscript] [script source]     - Domain d1m35b1, region B:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35b2, region B:177-440 [Jmol] [rasmolscript] [script source]     - Domain d1m35c1, region C:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35c2, region C:177-440 [Jmol] [rasmolscript] [script source]     - Domain d1m35d1, region D:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35d2, region D:177-440 [Jmol] [rasmolscript] [script source]     - Domain d1m35e1, region E:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35e2, region E:177-440 [Jmol] [rasmolscript] [script source]     - Domain d1m35f1, region F:1-176 [Jmol] [rasmolscript] [script source]     - Domain d1m35f2, region F:177-440 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m35_E] [1m35_A] [1m35] [1m35_C] [1m35_B] [1m35_F] [1m35_D] SWISS-PROT database: [P15034] Domain organization of [AMPP_ECOLI] by SWISSPFAM Domain found in 1M35: [AMP_N ] by SMART

Other resources with information on 1M35

Community annotation for 1M35 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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