1JJC	Ligase	date	Jul 04, 2001
title	Crystal Structure At 2.6a Resolution Of Phenylalanyl-Trna Sy Complexed With Phenylalanyl-Adenylate In The Presence Of Ma
authors	M.G.Safro, R.Fishman, N.Moor, V.Ankilova
compound		source
Molecule: Phenylalanyl-Trna Synthetase Alpha Chain Chain: A Fragment: Alpha Chain Synonym: Phenylalanine--Trna Ligase Alpha Chain; Phers Phenylalanine--Trna Ligase; Ec: 6.1.1.20		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8
Molecule: Phenylalanyl-Trna Synthetase Beta Chain Chain: B Fragment: Beta Chain Synonym: Phenylalanine--Trna Ligase Beta Chain; Phers; Phen -Trna Ligase; Ec: 6.1.1.20		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8
symmetry	Space Group: P 32 2 1	R_factor 0.216 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 173.400 173.400 138.400 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	FA5, MN, SO4	enzyme	Ligase E.C.6.1.1.20 BRENDA
related structures	by homologous chain: 1B70, 1B7Y
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure at 2.6 A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese., Fishman R, Ankilova V, Moor N, Safro M, Acta Crystallogr D Biol Crystallogr 2001 Nov;57(Pt 11):1534-44. PMID:11679717

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk] Biological Unit Coordinates (1jjc.pdb1.gz) 338 Kb LPC: Ligand-Protein Contacts for 1JJC CSU: Contacts of Structural Units for 1JJC Likely Quarternary Molecular Structure file(s) for 1JJC Retrieve 1JJC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JJC from S2C, [Save to disk]

View 1JJC in 3D

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Visual 3D analysis of 1JJC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JJC, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jjca_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jjcb1, region B:1-38,B:152-190 [Jmol] [rasmolscript] [script source]     - Domain d1jjcb6, region B:191-399 [Jmol] [rasmolscript] [script source]     - Domain d1jjcb3, region B:39-151 [Jmol] [rasmolscript] [script source]     - Domain d1jjcb2, region B:400-474 [Jmol] [rasmolscript] [script source]     - Domain d1jjcb5, region B:475-681 [Jmol] [rasmolscript] [script source]     - Domain d1jjcb4, region B:682-785 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jjc_A] [1jjc_B] [1jjc] SWISS-PROT database: [Q5SGX2] [Q5SGX1] Domain organization of [SYFA_THET8] [SYFB_THET8] by SWISSPFAM Domains found in 1JJC: [B3_4] [B5] [FDX-ACB ] by SMART

Other resources with information on 1JJC

Community annotation for 1JJC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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