1LVW Transferase date May 29, 2002
title Crystal Structure Of Glucose-1-Phosphate Thymidylyltransfera Complex With Dtdp
authors A.Dong, D.Christendat, E.F.Pai, Northeast Structural Genomics C (Nesg)
compound source
Molecule: Glucose-1-Phosphate Thymidylyltransferase
Chain: A, B, C, D
Ec: 2.7.7.24
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Gene: Rmla
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.680 115.880 116.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, GOL, SO4, TYD enzyme Transferase E.C.2.7.7.24 BRENDA
related structures by homologous chain: 1FXO, 1G1L
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (1lvw.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 1LVW
  • CSU: Contacts of Structural Units for 1LVW
  • Likely Quarternary Molecular Structure file(s) for 1LVW
  • Structure Factors (1508 Kb)
  • Retrieve 1LVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LVW from S2C, [Save to disk]
  • Re-refined 1lvw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LVW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LVW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lvwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lvwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1lvwc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1lvwd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lvw_D] [1lvw_A] [1lvw] [1lvw_C] [1lvw_B]
  • SWISS-PROT database: [O27819]
  • Domain organization of [O27819_METTH] by SWISSPFAM
    • Other resources with information on 1LVW
  • Community annotation for 1LVW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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