1O1W Hydrolase date Feb 12, 2003
title Solution Structure Of The Rnase H Domain Of The Hiv-1 Revers Transcriptase In The Presence Of Magnesium
authors K.Pari, G.A.Mueller, E.F.Derose, T.W.Kirby, R.E.London
compound source
Molecule: Ribonuclease H
Chain: A
Synonym: Rnase H
Ec: 3.1.26.4
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Variant: Strain Hxb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.26.4 BRENDA
note 1O1W supersedes 1LKU
related structures by homologous chain: 1RDH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the RNase H domain of the HIV-1 reverse transcriptase in the presence of magnesium., Pari K, Mueller GA, DeRose EF, Kirby TW, London RE, Biochemistry 2003 Jan 28;42(3):639-50. PMID:12534276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (1o1w.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1O1W
  • Original NMR restraints for 1O1W from PDB
  • Retrieve 1O1W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O1W from S2C, [Save to disk]
    • View 1O1W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O1W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O1W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o1wa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o1w] [1o1w_A]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
    • Other resources with information on 1O1W
  • Community annotation for 1O1W at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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