1RDH Hydrolase(Endoribonuclease) date Mar 05, 1993
title Crystallographic Analyses Of An Active Hiv-1 Ribonuclease H Show Structural Features That Distinguish It From The Inact
authors B.C.Finzel, D.Chattopadhyay, H.M.Einspahr
compound source
Molecule: Hiv-1 Reverse Transcriptase (Ribonuclease H Domai
Chain: A, B
Ec: 2.7.7.49
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.030 52.030 113.920 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1HYS, 1O1W
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analyses of an active HIV-1 ribonuclease H domain show structural features that distinguish it from the inactive form., Chattopadhyay D, Finzel BC, Munson SH, Evans DB, Sharma SK, Strakalaitus NA, Brunner DP, Eckenrode FM, Dauter Z, Betzel C, Einspahr HM, Acta Crystallogr D Biol Crystallogr. 1993 Jul 1;49(Pt 4):423-7. PMID:15299518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (1rdh.pdb1.gz) 4 Kb
  • Biological Unit Coordinates (1rdh.pdb2.gz) 4 Kb
  • CSU: Contacts of Structural Units for 1RDH
  • Likely Quarternary Molecular Structure file(s) for 1RDH
  • Structure Factors (135 Kb)
  • Retrieve 1RDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RDH from S2C, [Save to disk]
    • View 1RDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RDH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RDH, from MSDmotif at EBI
  • Genome occurence of 1RDH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rdha1, region A:432-556 [Jmol] [rasmolscript] [script source]
        - Domain d1rdhb1, region B:432-556 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rdh] [1rdh_B] [1rdh_A]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
    • Other resources with information on 1RDH
  • Community annotation for 1RDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science