1R45 Transferase date Oct 03, 2003
title Adp-Ribosyltransferase C3bot2 From Clostridium Botulinum, Tr Form
authors A.Teplyakov, G.Obmolova, G.L.Gilliland, S.Narumiya
compound source
Molecule: Mono-Adp-Ribosyltransferase C3
Chain: A, B, C, D
Fragment: Mature Protein
Synonym: Exoenzyme C3
Ec: 2.4.2.-
Engineered: Yes
Organism_scientific: Clostridium Phage C-St
Organism_taxid: 12336
Strain: C003-9
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1
R_factor 0.171 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.000 47.000 108.700 98.50 97.30 96.50
method X-Ray Diffractionresolution 1.57 Å
ligand GOL, SO4 enzyme Transferase E.C.2.4.2 BRENDA
note 1R45 is a representative structure
related structures by homologous chain: 1G24
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (1r45.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1r45.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (1r45.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (1r45.pdb4.gz) 37 Kb
  • Biological Unit Coordinates (1r45.pdb5.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1R45
  • CSU: Contacts of Structural Units for 1R45
  • Likely Quarternary Molecular Structure file(s) for 1R45
  • Structure Factors (1097 Kb)
  • Retrieve 1R45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R45 from S2C, [Save to disk]
  • Re-refined 1r45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R45
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R45, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r45a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r45b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1r45c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1r45d_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r45_A] [1r45_D] [1r45_C] [1r45] [1r45_B]
  • SWISS-PROT database: [Q00901]
  • Domain organization of [ARC3_CBCP] by SWISSPFAM
  • Other resources with information on 1R45
  • Community annotation for 1R45 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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