1B59 Hydrolase date Jan 13, 1999
title Complex Of Human Methionine Aminopeptidase-2 Complexed With
authors S.Liu, J.C.Clardy
compound source
Molecule: Protein (Methionine Aminopeptidase)
Chain: A
Synonym: Metap 2
Ec: 3.4.11.18
Engineered: Yes
Other_details: Ovalicin Covalently Linked To His 231 Ne2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Expression_system: Spodoptera Frugiperda Mnpv
Expression_system_taxid: 10455
Expression_system_strain: Sf21
Expression_system_cell_line: Sf21
Expression_system_vector_type: Virus
Expression_system_vector: Baculovirus
Other_details: Protein Was Expressed In Sf21 Insect Cells.. Baculovirus Pacsg2 Vector
symmetry Space Group: C 2 2 21
R_factor 0.178 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.723 99.108 101.292 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CO, OVA enzyme Hydrolase E.C.3.4.11.18 BRENDA
related structures by homologous chain: 1BN5, 1QZY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human methionine aminopeptidase-2 complexed with fumagillin., Liu S, Widom J, Kemp CW, Crews CM, Clardy J, Science 1998 Nov 13;282(5392):1324-7. PMID:9812898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1b59.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1B59
  • CSU: Contacts of Structural Units for 1B59
  • Likely Quarternary Molecular Structure file(s) for 1B59
  • Structure Factors (294 Kb)
  • Retrieve 1B59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B59 from S2C, [Save to disk]
  • Re-refined 1b59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1B59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B59
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B59, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b59a2, region A:110-374,A:449-478 [Jmol] [rasmolscript] [script source]
        - Domain d1b59a1, region A:375-448 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b59] [1b59_A]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
  • Other resources with information on 1B59
  • Community annotation for 1B59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science