1BQ5 Oxidoreductase date Aug 21, 1998
title Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
authors T.Inoue, M.Gotowda, Deligeer, S.Suzuki, K.Kataoka, K.Yamaguchi, H. M.Goho, K.A.I.Yasushi
compound source
Molecule: Nitrite Reductase
Chain: A
Organism_scientific: Achromobacter Xylosoxidans
Organism_taxid: 85698
Strain: Gifu 1051
symmetry Space Group: P 63
R_factor 0.180 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.565 106.565 63.578 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand CU enzyme
related structures by homologous chain: 1AS7, 1NDT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceType 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases., Inoue T, Gotowda M, Deligeer, Kataoka K, Yamaguchi K, Suzuki S, Watanabe H, Gohow M, Kai Y, J Biochem (Tokyo) 1998 Nov;124(5):876-9. PMID:9792907
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1bq5.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 1BQ5
  • CSU: Contacts of Structural Units for 1BQ5
  • Likely Quarternary Molecular Structure file(s) for 1BQ5
  • Structure Factors (156 Kb)
  • Retrieve 1BQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQ5 from S2C, [Save to disk]
  • Re-refined 1bq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BQ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bq5_2, region 160-340 [Jmol] [rasmolscript] [script source]
        - Domain d1bq5_1, region 8-159 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bq5] [1bq5_A]
  • SWISS-PROT database: [O68601]
  • Domain organization of [O68601_ALCXX] by SWISSPFAM
  • Other resources with information on 1BQ5
  • Community annotation for 1BQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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