1BVY Oxidoreductase date Sep 21, 1998
title Complex Of The Heme And Fmn-Binding Domains Of The Cytochrom 3)
authors I.F.Sevrioukova, H.Li, H.Zhang, J.A.Peterson, T.L.Poulos
compound source
Molecule: Protein (Cytochrome P450 Bm-3)
Chain: A, B
Fragment: Heme-Binding Domain
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Dh5af'Iq
Expression_system_plasmid: Pproex
Other_details: Synthetic Gene

Molecule: Protein (Cytochrome P450 Bm-3)
Chain: F
Fragment: Fmn-Binding Domain
Ec: 1.14.14.1
Engineered: Yes

Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Dh5af'Iq
Expression_system_plasmid: Pproex
Other_details: Synthetic Gene
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.840 94.680 209.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand EDO, FMN, HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
note 1BVY is a representative structure
related structures by homologous chain: 1P0V, 1SMI
Gene
Ontology
ChainFunctionProcessComponent
A, B


F


Primary referenceStructure of a cytochrome P450-redox partner electron-transfer complex., Sevrioukova IF, Li H, Zhang H, Peterson JA, Poulos TL, Proc Natl Acad Sci U S A 1999 Mar 2;96(5):1863-8. PMID:10051560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (1bvy.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 1BVY
  • CSU: Contacts of Structural Units for 1BVY
  • Likely Quarternary Molecular Structure file(s) for 1BVY
  • Retrieve 1BVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BVY from S2C, [Save to disk]
  • View 1BVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BVY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bvya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bvyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bvyf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bvy_A] [1bvy] [1bvy_B] [1bvy_F]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
  • Other resources with information on 1BVY
  • Community annotation for 1BVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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