1D7N Toxin date Oct 19, 1999
title Solution Structure Analysis Of The Mastoparan With Detergent
authors Y.Hori, M.Demura, M.Iwadate, T.Niidome, H.Aoyagi, T.Asakura
compound source
Molecule: Protein (Wasp Venom Peptide (Mastoparan))
Chain: A
 Organism_scientific: Vespula Lewisii
Organism_taxid: 7452
Secretion: Venom
methodSolution NMR
ligand NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceInteraction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers., Hori Y, Demura M, Iwadate M, Ulrich AS, Niidome T, Aoyagi H, Asakura T, Eur J Biochem 2001 Jan;268(2):302-9. PMID:11168364
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1d7n.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1D7N
  • CSU: Contacts of Structural Units for 1D7N
  • Retrieve 1D7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D7N from S2C, [Save to disk]
    • View 1D7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D7N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D7N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d7na_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d7n_A] [1d7n]
  • SWISS-PROT database: [P01514]
  • Belongs to the amphipathic peptide mastoparan (mastoparan) family according to TCDB.
  • Domain organization of [MAST_VESLE] by SWISSPFAM
    • Other resources with information on 1D7N
  • Community annotation for 1D7N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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