OCA Atlas for 1FV5

1FV5

Transcription

date

Sep 18, 2000

title

Solution Structure Of The First Zinc Finger From The Drosoph Shaped Transcription Factor

authors

C.K.Liew, K.Kowalski, A.H.Fox, A.Newton, B.K.Sharpe, M.Crossley, J

compound

source

Molecule: First Zinc Finger Of U-Shaped
Chain: A
Fragment: First Zinc Finger Domain (Residues 202-235)
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t

method

Solution NMR

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions., Liew CK, Kowalski K, Fox AH, Newton A, Sharpe BK, Crossley M, Mackay JP, Structure Fold Des 2000 Nov 15;8(11):1157-66. PMID:11080638

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]

Biological Unit Coordinates (1fv5.pdb1.gz) 9 Kb

LPC: Ligand-Protein Contacts for 1FV5

CSU: Contacts of Structural Units for 1FV5

Original NMR restraints for 1FV5 from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1FV5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1FV5 from S2C, [Save to disk]

View 1FV5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FV5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1FV5, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1fv5a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fv5] [1fv5_A]

SWISS-PROT database: [Q9VPQ6]

Domain organization of [USH_DROME] by SWISSPFAM

Domain found in 1FV5: [ZnF_C2H2 ] by SMART

Other resources with information on 1FV5

Community annotation for 1FV5 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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