1HS7 Endocytosis Exocytosis date Dec 24, 2000
title Vam3p N-Terminal Domain Solution Structure
authors I.Dulubova, T.Yamaguchi, Y.Wang, T.C.Sudhof, J.Rizo
compound source
Molecule: Syntaxin Vam3
Chain: A
Fragment: Residues 23-119
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kt
methodSolution NMR
note 1HS7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceVam3p structure reveals conserved and divergent properties of syntaxins., Dulubova I, Yamaguchi T, Wang Y, Sudhof TC, Rizo J, Nat Struct Biol 2001 Mar;8(3):258-64. PMID:11224573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (1hs7.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1HS7
  • Original NMR restraints for 1HS7 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HS7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HS7 from S2C, [Save to disk]
    • View 1HS7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HS7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HS7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hs7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hs7_A] [1hs7]
  • SWISS-PROT database: [Q12241]
  • Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB.
  • Domain organization of [VAM3_YEAST] by SWISSPFAM
    • Other resources with information on 1HS7
  • Community annotation for 1HS7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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